Detailed information of component protein
Summary
| Component ID | T6CP015406 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01218  (Type i4b) |
| Strain | Xanthomonas oryzae pv. oryzicola strain GX01 |
| Replicon | chromosome |
| Sequence | Protein sequence (167 a.a.); Nucleotide sequence (501 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XOCgx_RS16485 |
| Coordinate (Strand) | 3512216..3512716 (-) |
| NCBI ID | WP_003467601.1 |
| RefSeq | NZ_CP043403 |
| Uniprot ID | A0A0C5V208_9XANT, A0A1M4IKG8_XANCT, A0A514ECX6_XANCT, A0A411QU45_9XANT, G7TI18_XANOB, A0A0G3LUN6_XANCT, A0A1C3NS62_9XANT, A0A365S229_XANOO |
| KEGG ID | xtn:FD63_13815, xoz:BE73_16545, xor:XOC_1353 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 8.3e-61 | 12..163 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-166 | MAKKESIQKRLQKIRPPRVQLTYDVEKGDAIEQKELPFVVGVLGDFSGNPEQPLAKVKDRKFVNVDLDNFDEVMEGMAPRAVYRVPNKISDAGGEFGVELKFKSIDDFRPEAVVDQVEPLRKLLESRTKLADLRNKLAGNEKLEDLLTDVLNNTEQLKKLGREKEK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9959 | - | - |
Protein sequence: 167 a.a.
>T6CP015406 NZ_CP043403:c3512716-3512216 [Xanthomonas oryzae pv. oryzicola] [TssB]
MAKKESIQKRLQKIRPPRVQLTYDVEKGDAIEQKELPFVVGVLGDFSGNPEQPLAKVKDRKFVNVDLDNFDEVMEGMAPR
AVYRVPNKISDAGGEFGVELKFKSIDDFRPEAVVDQVEPLRKLLESRTKLADLRNKLAGNEKLEDLLTDVLNNTEQLKKL
GREKEK*
MAKKESIQKRLQKIRPPRVQLTYDVEKGDAIEQKELPFVVGVLGDFSGNPEQPLAKVKDRKFVNVDLDNFDEVMEGMAPR
AVYRVPNKISDAGGEFGVELKFKSIDDFRPEAVVDQVEPLRKLLESRTKLADLRNKLAGNEKLEDLLTDVLNNTEQLKKL
GREKEK*
Nucleotide sequence: 501 bp
>T6CP015406 NZ_CP043403:c3512716-3512216 [Xanthomonas oryzae pv. oryzicola] [TssB]
ATGGCTAAGAAGGAAAGCATCCAGAAACGTCTGCAGAAGATTCGGCCGCCGCGCGTGCAGCTGACCTACGACGTGGAAAA
GGGTGACGCGATCGAACAGAAGGAGCTGCCGTTCGTGGTAGGCGTGCTTGGGGATTTCAGCGGCAATCCCGAACAGCCCC
TGGCCAAGGTCAAGGACCGCAAATTCGTCAACGTCGACCTCGACAACTTCGACGAGGTGATGGAGGGAATGGCGCCGCGC
GCGGTTTACCGCGTGCCGAACAAGATCAGCGATGCCGGCGGCGAGTTCGGCGTCGAACTCAAGTTCAAGTCGATCGACGA
CTTCCGTCCGGAGGCTGTGGTCGATCAGGTCGAACCGCTGCGCAAGCTGCTAGAATCGCGCACCAAGCTGGCAGACCTGC
GCAACAAGCTGGCCGGCAACGAGAAGCTCGAAGACCTGCTAACGGACGTGTTGAACAACACCGAACAGCTGAAGAAGCTG
GGTCGGGAAAAGGAGAAGTAA
ATGGCTAAGAAGGAAAGCATCCAGAAACGTCTGCAGAAGATTCGGCCGCCGCGCGTGCAGCTGACCTACGACGTGGAAAA
GGGTGACGCGATCGAACAGAAGGAGCTGCCGTTCGTGGTAGGCGTGCTTGGGGATTTCAGCGGCAATCCCGAACAGCCCC
TGGCCAAGGTCAAGGACCGCAAATTCGTCAACGTCGACCTCGACAACTTCGACGAGGTGATGGAGGGAATGGCGCCGCGC
GCGGTTTACCGCGTGCCGAACAAGATCAGCGATGCCGGCGGCGAGTTCGGCGTCGAACTCAAGTTCAAGTCGATCGACGA
CTTCCGTCCGGAGGCTGTGGTCGATCAGGTCGAACCGCTGCGCAAGCTGCTAGAATCGCGCACCAAGCTGGCAGACCTGC
GCAACAAGCTGGCCGGCAACGAGAAGCTCGAAGACCTGCTAACGGACGTGTTGAACAACACCGAACAGCTGAAGAAGCTG
GGTCGGGAAAAGGAGAAGTAA