Detailed information of component protein
Summary
| Component ID | T6CP015404 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01218  (Type i4b) |
| Strain | Xanthomonas oryzae pv. oryzicola strain GX01 |
| Replicon | chromosome |
| Sequence | Protein sequence (166 a.a.); Nucleotide sequence (498 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XOCgx_RS16475 |
| Coordinate (Strand) | 3510077..3510574 (-) |
| NCBI ID | WP_003467612.1 |
| RefSeq | NZ_CP043403 |
| Uniprot ID | A0A0C5UMV1_9XANT, A0A1M4L5E6_XANCT, A0A1D9EIL2_XANCG, A0A514ECW6_XANCT, A0A7Z7EJV1_9XANT, Q5GX38_XANOR, A0A411QU25_9XANT, A0A0K0GN93_XANOP, A0A2H1S6B6_XANCI, G7TI20_XANOB, A0A2S7DV34_9XANT, A0A0G3LQ76_XANCT, A0A1C3NSA4_9XANT, A0A0U2JHD5_XANOO |
| KEGG ID | xoo:XOO3479, xor:XOC_1355, xtn:FD63_13805, xoz:BE73_16535, xop:PXO_02047 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.8e-35 | 5..137 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-165 | MQHAFLSIDTIKGESHDDKHTDWVEIKSFSQDLLQPRSATASTAGGQSAARVNLSPIEIVKSIDLSTTALNQACANGTTFPKARIEFMRADKDGNAINYYLVELMNVLVHRVTTTVDEDGMPQEVVQLSFGAIKWTYNQQKPEGGVGGKAVAQWSATKNIPNYTV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9411 | - | - |
Protein sequence: 166 a.a.
>T6CP015404 NZ_CP043403:c3510574-3510077 [Xanthomonas oryzae pv. oryzicola] [TssD]
MQHAFLSIDTIKGESHDDKHTDWVEIKSFSQDLLQPRSATASTAGGQSAARVNLSPIEIVKSIDLSTTALNQACANGTTF
PKARIEFMRADKDGNAINYYLVELMNVLVHRVTTTVDEDGMPQEVVQLSFGAIKWTYNQQKPEGGVGGKAVAQWSATKNI
PNYTV*
MQHAFLSIDTIKGESHDDKHTDWVEIKSFSQDLLQPRSATASTAGGQSAARVNLSPIEIVKSIDLSTTALNQACANGTTF
PKARIEFMRADKDGNAINYYLVELMNVLVHRVTTTVDEDGMPQEVVQLSFGAIKWTYNQQKPEGGVGGKAVAQWSATKNI
PNYTV*
Nucleotide sequence: 498 bp
>T6CP015404 NZ_CP043403:c3510574-3510077 [Xanthomonas oryzae pv. oryzicola] [TssD]
ATGCAGCACGCGTTTCTTTCTATCGATACCATCAAGGGTGAATCGCACGACGACAAGCACACGGACTGGGTGGAGATCAA
GTCGTTCTCCCAGGACTTGTTGCAGCCGCGCTCGGCCACCGCATCCACCGCTGGCGGTCAGTCGGCCGCTCGTGTAAACC
TGTCGCCGATCGAGATCGTCAAGTCGATCGATCTGTCCACCACCGCGCTGAATCAGGCGTGCGCCAACGGCACCACCTTC
CCCAAAGCCCGCATCGAGTTCATGCGCGCCGACAAGGACGGCAATGCCATCAACTACTACCTGGTTGAGTTGATGAACGT
GCTGGTACACCGCGTCACCACGACGGTGGACGAGGACGGCATGCCGCAAGAAGTCGTCCAGCTGAGCTTCGGCGCGATCA
AGTGGACCTACAACCAGCAGAAGCCGGAAGGCGGAGTCGGCGGCAAGGCGGTTGCGCAGTGGAGTGCTACCAAGAACATT
CCTAACTACACCGTTTGA
ATGCAGCACGCGTTTCTTTCTATCGATACCATCAAGGGTGAATCGCACGACGACAAGCACACGGACTGGGTGGAGATCAA
GTCGTTCTCCCAGGACTTGTTGCAGCCGCGCTCGGCCACCGCATCCACCGCTGGCGGTCAGTCGGCCGCTCGTGTAAACC
TGTCGCCGATCGAGATCGTCAAGTCGATCGATCTGTCCACCACCGCGCTGAATCAGGCGTGCGCCAACGGCACCACCTTC
CCCAAAGCCCGCATCGAGTTCATGCGCGCCGACAAGGACGGCAATGCCATCAACTACTACCTGGTTGAGTTGATGAACGT
GCTGGTACACCGCGTCACCACGACGGTGGACGAGGACGGCATGCCGCAAGAAGTCGTCCAGCTGAGCTTCGGCGCGATCA
AGTGGACCTACAACCAGCAGAAGCCGGAAGGCGGAGTCGGCGGCAAGGCGGTTGCGCAGTGGAGTGCTACCAAGAACATT
CCTAACTACACCGTTTGA