Detailed information of component protein


Summary

Component ID T6CP015404
Component protein type TssD
T6SS ID (Type) T6SS01218 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (166 a.a.); Nucleotide sequence (498 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) XOCgx_RS16475
Coordinate (Strand) 3510077..3510574 (-)
NCBI ID WP_003467612.1
RefSeq NZ_CP043403
Uniprot ID A0A0C5UMV1_9XANT, A0A1M4L5E6_XANCT, A0A1D9EIL2_XANCG, A0A514ECW6_XANCT, A0A7Z7EJV1_9XANT, Q5GX38_XANOR, A0A411QU25_9XANT, A0A0K0GN93_XANOP, A0A2H1S6B6_XANCI, G7TI20_XANOB, A0A2S7DV34_9XANT, A0A8A6XDD4_XANCG, A0A0G3LQ76_XANCT, A0A1C3NSA4_9XANT, A0A0U2JHD5_XANOO
KEGG ID xoo:XOO3479, xor:XOC_1355, xtn:FD63_13805, xop:PXO_02047
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 1.8e-35 5..137

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-165 MQHAFLSIDTIKGESHDDKHTDWVEIKSFSQDLLQPRSATASTAGGQSAARVNLSPIEIVKSIDLSTTALNQACANGTTFPKARIEFMRADKDGNAINYYLVELMNVLVHRVTTTVDEDGMPQEVVQLSFGAIKWTYNQQKPEGGVGGKAVAQWSATKNIPNYTV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9411 - -



  Protein sequence: 166 a.a.    

>T6CP015404 NZ_CP043403:c3510574-3510077 [Xanthomonas oryzae pv. oryzicola] [TssD]
MQHAFLSIDTIKGESHDDKHTDWVEIKSFSQDLLQPRSATASTAGGQSAARVNLSPIEIVKSIDLSTTALNQACANGTTF
PKARIEFMRADKDGNAINYYLVELMNVLVHRVTTTVDEDGMPQEVVQLSFGAIKWTYNQQKPEGGVGGKAVAQWSATKNI
PNYTV*

  Nucleotide sequence: 498 bp    

>T6CP015404 NZ_CP043403:c3510574-3510077 [Xanthomonas oryzae pv. oryzicola] [TssD]
ATGCAGCACGCGTTTCTTTCTATCGATACCATCAAGGGTGAATCGCACGACGACAAGCACACGGACTGGGTGGAGATCAA
GTCGTTCTCCCAGGACTTGTTGCAGCCGCGCTCGGCCACCGCATCCACCGCTGGCGGTCAGTCGGCCGCTCGTGTAAACC
TGTCGCCGATCGAGATCGTCAAGTCGATCGATCTGTCCACCACCGCGCTGAATCAGGCGTGCGCCAACGGCACCACCTTC
CCCAAAGCCCGCATCGAGTTCATGCGCGCCGACAAGGACGGCAATGCCATCAACTACTACCTGGTTGAGTTGATGAACGT
GCTGGTACACCGCGTCACCACGACGGTGGACGAGGACGGCATGCCGCAAGAAGTCGTCCAGCTGAGCTTCGGCGCGATCA
AGTGGACCTACAACCAGCAGAAGCCGGAAGGCGGAGTCGGCGGCAAGGCGGTTGCGCAGTGGAGTGCTACCAAGAACATT
CCTAACTACACCGTTTGA