Detailed information of component protein
Summary
| Component ID | T6CP015403 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01218  (Type i4b) |
| Strain | Xanthomonas oryzae pv. oryzicola strain GX01 |
| Replicon | chromosome |
| Sequence | Protein sequence (163 a.a.); Nucleotide sequence (489 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XOCgx_RS16470 |
| Coordinate (Strand) | 3509441..3509929 (-) |
| NCBI ID | WP_075242668.1 |
| RefSeq | NZ_CP043403 |
| Uniprot ID | A0A5C2EVF3_9XANT |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 8.1e-20 | 33..133 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-162 | MKGLEPSLLEKLFDDTPKSTGSSHVFKAISIDQYKESVARDLEGLLNTRSAFSEEGLTEFPNCKQSLLTYGLGDFSAMSLANGYDRTMICRSLEQAIARHEGRLRNVHVTLETAGQFGGGLHFTIHALLDMEPAREPVSFDAMLQPSTLQYSVSRLRRQAAP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9855 | - | - |
Protein sequence: 163 a.a.
>T6CP015403 NZ_CP043403:c3509929-3509441 [Xanthomonas oryzae pv. oryzicola] [TssE]
MKGLEPSLLEKLFDDTPKSTGSSHVFKAISIDQYKESVARDLEGLLNTRSAFSEEGLTEFPNCKQSLLTYGLGDFSAMSL
ANGYDRTMICRSLEQAIARHEGRLRNVHVTLETAGQFGGGLHFTIHALLDMEPAREPVSFDAMLQPSTLQYSVSRLRRQA
AP*
MKGLEPSLLEKLFDDTPKSTGSSHVFKAISIDQYKESVARDLEGLLNTRSAFSEEGLTEFPNCKQSLLTYGLGDFSAMSL
ANGYDRTMICRSLEQAIARHEGRLRNVHVTLETAGQFGGGLHFTIHALLDMEPAREPVSFDAMLQPSTLQYSVSRLRRQA
AP*
Nucleotide sequence: 489 bp
>T6CP015403 NZ_CP043403:c3509929-3509441 [Xanthomonas oryzae pv. oryzicola] [TssE]
ATGAAGGGACTCGAACCCAGTCTGTTGGAAAAATTGTTCGACGACACGCCCAAGTCCACGGGTAGCTCGCATGTGTTCAA
GGCCATCTCCATCGACCAATACAAGGAATCGGTCGCTCGCGACCTGGAAGGCCTATTGAACACCCGTTCGGCCTTCAGCG
AAGAAGGCCTCACCGAATTTCCCAATTGCAAGCAGTCGTTGCTGACCTACGGCCTCGGCGATTTTTCCGCGATGAGCCTG
GCCAATGGCTACGACCGCACGATGATCTGCCGCTCGCTGGAGCAGGCGATCGCGCGCCATGAGGGGCGCCTGCGCAACGT
GCACGTGACGCTGGAGACCGCCGGCCAGTTCGGCGGCGGCCTGCATTTCACCATCCATGCGTTGCTGGACATGGAGCCGG
CGCGCGAGCCGGTGAGCTTCGACGCCATGCTGCAACCGTCCACCCTGCAGTACTCGGTCAGCCGCCTGCGGCGCCAGGCA
GCGCCCTGA
ATGAAGGGACTCGAACCCAGTCTGTTGGAAAAATTGTTCGACGACACGCCCAAGTCCACGGGTAGCTCGCATGTGTTCAA
GGCCATCTCCATCGACCAATACAAGGAATCGGTCGCTCGCGACCTGGAAGGCCTATTGAACACCCGTTCGGCCTTCAGCG
AAGAAGGCCTCACCGAATTTCCCAATTGCAAGCAGTCGTTGCTGACCTACGGCCTCGGCGATTTTTCCGCGATGAGCCTG
GCCAATGGCTACGACCGCACGATGATCTGCCGCTCGCTGGAGCAGGCGATCGCGCGCCATGAGGGGCGCCTGCGCAACGT
GCACGTGACGCTGGAGACCGCCGGCCAGTTCGGCGGCGGCCTGCATTTCACCATCCATGCGTTGCTGGACATGGAGCCGG
CGCGCGAGCCGGTGAGCTTCGACGCCATGCTGCAACCGTCCACCCTGCAGTACTCGGTCAGCCGCCTGCGGCGCCAGGCA
GCGCCCTGA