Detailed information of component protein


Summary

Component ID T6CP015402
Component protein type TssF
T6SS ID (Type) T6SS01218 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (612 a.a.); Nucleotide sequence (1836 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XOCgx_RS16465
Coordinate (Strand) 3507603..3509438 (-)
NCBI ID WP_014502420.1
RefSeq NZ_CP043403
Uniprot ID A0A5C2EW38_9XANT, A0A5E8KW05_9XANT, G7TI23_XANOB
KEGG ID xor:XOC_1358
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 8.9e-187 2..607
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-611 MQDLLPYYERELGYLRRYGREFAERYPKIAGRLQLSADGSQDPHVERLIEAFALMGARISKRIEDDYPEFTDALLEVLYPHYLRPFPSCSIAYFDMEGVAAKLSAPIRVPRGSYLQSRPVRGINCRFRTAYDVVLVPVAVKAASYRGVAEAPMAVSLPPGTGAQISISFELLSDQASFAGLGTDALRFFVDGEPSFCSAMRDALALGVKAAYVESDGSGRWRRLADTPLVPVGFADDESLIDFPARSHPAYRLLTELFGYPDKFGFFDLQLKPVTAGASRWFTLHLVLHATPPDRAANQVLEELDCKNIRLGCTPVVNLFAQHGEPIRVTHRSVTYPVIADGRRAFAYEVHSIDSVHRIRQTPQGELIQEFRPFYSLHHGEDPERAGQYWVARRDEDVARESPGYETEVSFVDLEFNPTLPQTDVVSVELTCSNRDLPSQLAYGIAGGDLSIEGGTPARAISLLRKPSRPLRFRHGRGAQWRLISHLSLNQLSLTGSGLPALKEMLRLYDISGSSVSSRQIDGIVGIEQYPVTTWLSGKHFASVVRGLEVRLTISENHFVGTGVAAFAHVLDHFFGLYVHANSFIRLVLISSDTGEELVRCLPRSGESILA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9942 - -


  Protein sequence: 612 a.a.    

>T6CP015402 NZ_CP043403:c3509438-3507603 [Xanthomonas oryzae pv. oryzicola] [TssF]
MQDLLPYYERELGYLRRYGREFAERYPKIAGRLQLSADGSQDPHVERLIEAFALMGARISKRIEDDYPEFTDALLEVLYP
HYLRPFPSCSIAYFDMEGVAAKLSAPIRVPRGSYLQSRPVRGINCRFRTAYDVVLVPVAVKAASYRGVAEAPMAVSLPPG
TGAQISISFELLSDQASFAGLGTDALRFFVDGEPSFCSAMRDALALGVKAAYVESDGSGRWRRLADTPLVPVGFADDESL
IDFPARSHPAYRLLTELFGYPDKFGFFDLQLKPVTAGASRWFTLHLVLHATPPDRAANQVLEELDCKNIRLGCTPVVNLF
AQHGEPIRVTHRSVTYPVIADGRRAFAYEVHSIDSVHRIRQTPQGELIQEFRPFYSLHHGEDPERAGQYWVARRDEDVAR
ESPGYETEVSFVDLEFNPTLPQTDVVSVELTCSNRDLPSQLAYGIAGGDLSIEGGTPARAISLLRKPSRPLRFRHGRGAQ
WRLISHLSLNQLSLTGSGLPALKEMLRLYDISGSSVSSRQIDGIVGIEQYPVTTWLSGKHFASVVRGLEVRLTISENHFV
GTGVAAFAHVLDHFFGLYVHANSFIRLVLISSDTGEELVRCLPRSGESILA*

  Nucleotide sequence: 1836 bp    

>T6CP015402 NZ_CP043403:c3509438-3507603 [Xanthomonas oryzae pv. oryzicola] [TssF]
ATGCAAGACCTGCTTCCCTACTACGAACGCGAACTGGGCTATCTGCGTCGCTACGGGCGCGAGTTCGCCGAGCGCTATCC
CAAGATTGCCGGGCGCCTGCAGCTGTCGGCCGACGGCAGCCAGGATCCGCATGTCGAGCGCCTGATCGAGGCGTTCGCGC
TGATGGGCGCGCGCATCTCCAAGCGCATTGAGGACGACTACCCCGAGTTCACCGACGCGCTGCTGGAAGTGCTGTATCCG
CACTATCTGCGGCCGTTTCCGTCCTGCTCCATCGCCTATTTCGACATGGAAGGCGTGGCTGCCAAGCTCAGCGCGCCGAT
CCGCGTGCCGCGCGGTAGCTACCTGCAGTCGCGCCCGGTGCGCGGGATCAACTGCCGGTTCCGCACCGCCTACGACGTGG
TACTGGTGCCGGTGGCGGTGAAGGCCGCCAGCTACCGCGGCGTGGCCGAAGCGCCGATGGCGGTCAGCCTGCCGCCGGGC
ACCGGCGCACAGATCTCGATCAGCTTCGAGCTGTTGTCCGACCAGGCCTCGTTCGCTGGCCTGGGCACCGACGCGCTGCG
TTTCTTCGTCGACGGCGAGCCGTCGTTCTGCTCGGCGATGCGCGATGCGCTGGCGCTGGGGGTCAAGGCAGCCTATGTCG
AGTCCGACGGCAGCGGACGCTGGCGCCGGCTGGCGGACACCCCGCTGGTGCCAGTGGGATTCGCCGACGACGAATCGCTG
ATCGATTTCCCGGCGCGTTCGCACCCGGCCTACCGCCTGCTGACCGAGCTGTTCGGCTACCCGGACAAGTTCGGCTTCTT
CGATCTTCAGCTCAAGCCGGTGACCGCCGGCGCCAGCCGCTGGTTCACGTTGCACCTGGTCCTACACGCGACGCCGCCCG
ATCGCGCCGCCAACCAAGTGCTCGAGGAGTTGGATTGCAAGAACATCCGCCTGGGCTGCACCCCGGTGGTGAACCTGTTC
GCGCAGCACGGCGAGCCGATCCGCGTCACCCATCGCAGCGTCACCTATCCGGTGATCGCCGACGGGCGCCGCGCCTTTGC
CTACGAAGTGCATTCGATCGATTCGGTGCACCGTATCCGGCAGACTCCGCAGGGCGAGCTGATCCAGGAGTTCCGCCCGT
TCTATTCGCTGCACCATGGCGAAGACCCCGAGCGCGCCGGCCAGTATTGGGTGGCGCGGCGCGACGAGGATGTGGCGCGG
GAGAGTCCCGGTTACGAAACCGAAGTGAGCTTCGTGGACCTGGAATTCAATCCGACCCTGCCGCAGACCGATGTGGTCAG
CGTCGAACTCACCTGCAGCAATCGCGATTTGCCCAGCCAGCTCGCCTACGGCATCGCCGGCGGCGACCTGTCGATCGAGG
GCGGAACGCCGGCGCGCGCGATCAGCCTGTTGCGCAAGCCGAGCCGGCCACTGCGGTTCCGCCACGGACGCGGCGCGCAA
TGGCGGCTGATCTCGCACCTGTCGTTGAATCAGCTGTCGCTGACCGGCAGCGGCTTGCCGGCGTTGAAGGAGATGCTGCG
GCTGTACGACATCTCCGGCAGCAGCGTGTCGTCGCGGCAGATCGACGGCATCGTCGGCATCGAGCAGTATCCGGTCACCA
CCTGGCTGTCCGGCAAGCATTTCGCATCGGTGGTGCGCGGCCTGGAAGTGCGTTTGACCATCAGCGAAAACCATTTCGTC
GGGACCGGCGTGGCCGCGTTCGCGCATGTGCTCGACCACTTCTTCGGCCTCTACGTCCACGCCAACAGCTTTATCCGGCT
GGTGCTCATTTCCAGCGACACAGGGGAGGAACTCGTCCGATGCTTACCGCGAAGCGGCGAATCGATCCTGGCGTAG