SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP015401
Component protein type	TssG
T6SS ID (Type)	T6SS01218 (Type i4b)
Strain	Xanthomonas oryzae pv. oryzicola strain GX01
Replicon	chromosome
Sequence	Protein sequence (364 a.a.); Nucleotide sequence (1092 bp)
Reference	[1] Zhu PC, Li YM, Yang X, et al. Type VI secretion system is not required for virulence on rice but for inter-bacterial competition in Xanthomonas oryzae pv. oryzicola. Res Microbiol. 2020 Mar;171(2):64-73. doi: 10.1016/j.resmic.2019.10.004. Epub 2019 Oct 30. PMID: 31676435

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	XOCgx_RS16460
Coordinate (Strand)	3506548..3507639 (-)
NCBI ID	WP_075242666.1
RefSeq	NZ_CP043403
Uniprot ID	A0A5C2EX05_9XANT
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	4.4e-92	19..343

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-363	MLTAKRRIDPGVALQLLAEPHRFQFFQAMRILERVFQRQGGKAGQALPTRVRFHNSLSLAFPATELDPVGQAYSQDGERLESDAALAFAIETESLGEVHLTPNFMGLLGTSGALPLHYTETLHERELYQRDRTPRAFLDMFSNRAVALHYAAWKKHRLALQYELDRRERFLPLVLSLLGMGMPGLRDRMVDGGGDVFDQAVAYYAGAIRQRPISAKLLQRVLADYFKVPVELEQFVGAWYKVPAQQATRLGQANATLGSSALAGDRVWQRDLRMRLRFGPLQREAFDQFLPGGSAAKALSKWLMLLTGGGLEYEVKLVLRAEDVRGSGVGEALGVRLGWDSYLCSRPQTQPRADTTYGLHTLQ

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9665	-	-

Protein sequence: 364 a.a.

						>T6CP015401 NZ_CP043403:c3507639-3506548 [Xanthomonas oryzae pv. oryzicola] [TssG]
MLTAKRRIDPGVALQLLAEPHRFQFFQAMRILERVFQRQGGKAGQALPTRVRFHNSLSLAFPATELDPVGQAYSQDGERL
ESDAALAFAIETESLGEVHLTPNFMGLLGTSGALPLHYTETLHERELYQRDRTPRAFLDMFSNRAVALHYAAWKKHRLAL
QYELDRRERFLPLVLSLLGMGMPGLRDRMVDGGGDVFDQAVAYYAGAIRQRPISAKLLQRVLADYFKVPVELEQFVGAWY
KVPAQQATRLGQANATLGSSALAGDRVWQRDLRMRLRFGPLQREAFDQFLPGGSAAKALSKWLMLLTGGGLEYEVKLVLR
AEDVRGSGVGEALGVRLGWDSYLCSRPQTQPRADTTYGLHTLQ*					

Nucleotide sequence: 1092 bp

						>T6CP015401 NZ_CP043403:c3507639-3506548 [Xanthomonas oryzae pv. oryzicola] [TssG]
ATGCTTACCGCGAAGCGGCGAATCGATCCTGGCGTAGCGCTGCAATTGCTGGCCGAGCCGCATCGCTTCCAGTTTTTCCA
GGCGATGCGGATTCTGGAGCGGGTGTTCCAGCGCCAGGGGGGCAAGGCCGGTCAGGCCCTGCCCACACGCGTACGTTTTC
ACAACTCGCTGTCGTTGGCGTTTCCGGCGACCGAGCTGGACCCCGTCGGCCAGGCCTATTCGCAGGACGGCGAGCGCCTG
GAAAGCGATGCGGCGCTGGCGTTCGCGATCGAGACCGAGAGCCTGGGCGAAGTGCATCTGACCCCGAACTTCATGGGGTT
GCTGGGCACCTCCGGCGCATTGCCGCTGCACTACACCGAGACCCTGCACGAACGCGAGCTGTACCAGCGCGACCGTACCC
CACGCGCGTTCCTGGACATGTTCTCCAACCGCGCGGTGGCGCTGCACTACGCCGCGTGGAAGAAGCACCGGCTGGCGCTG
CAGTATGAGCTGGACCGGCGCGAGCGCTTCCTGCCGCTGGTGCTGTCGCTGCTGGGCATGGGCATGCCGGGACTGCGCGA
TCGCATGGTCGACGGCGGCGGCGACGTCTTCGACCAGGCGGTGGCGTACTACGCCGGCGCCATCCGCCAGCGGCCGATCT
CGGCCAAGCTGCTGCAGCGCGTGCTGGCCGACTACTTCAAGGTGCCGGTGGAGCTGGAGCAGTTCGTCGGCGCCTGGTAC
AAGGTGCCGGCGCAACAGGCCACGCGGCTGGGCCAGGCCAACGCCACTCTCGGGTCCAGTGCGCTGGCCGGCGACCGGGT
GTGGCAGCGCGACCTGCGCATGCGCCTGCGCTTCGGTCCGCTGCAGCGTGAGGCTTTCGACCAGTTCCTGCCCGGAGGCA
GCGCCGCGAAGGCCTTGTCGAAATGGCTGATGCTGCTCACCGGCGGCGGGCTGGAATACGAGGTCAAGCTGGTGCTGCGC
GCCGAGGACGTACGCGGCTCCGGCGTCGGCGAAGCACTGGGCGTACGCCTGGGCTGGGACAGCTACCTATGCTCGCGCCC
GCAGACCCAGCCGCGCGCCGACACCACCTACGGTCTGCATACCCTTCAATAG					