Detailed information of component protein


Summary

Component ID T6CP015400
Component protein type TssH
T6SS ID (Type) T6SS01218 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (911 a.a.); Nucleotide sequence (2733 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XOCgx_RS16455
Coordinate (Strand) 3503730..3506462 (-)
NCBI ID WP_149621758.1
RefSeq NZ_CP043403
Uniprot ID UPI0011F32C74
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.6e-42 640..808
AAA_lid_9 PF17871.3 7.1e-27 380..474
AAA PF00004.31 3.3e-10 239..351
ClpB_D2-small PF10431.11 9.5e-10 815..891
Clp_N PF02861.22 2.5e-08 23..67
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-910 MSINLKTLISKLDDTCRQAAERAANLCMARGNYEVDLEHLFLALLEQPQSDFVLIARRCGISPETLECDLSEEVGRFKAGNTRTPVFSQHLPTLFEHAWLIASLDSETTRIRSGHLLLALLTEPDLSQLAYRGSKQFVKIKLDALKHDFARLTEGSQEAGQSLRFADAGQADVGGDPVDGLAGVPDGKGGLTKTPALDQFTTNLVQRARDAQIDPVIGRDGEIRQVIDILMRRRQNNPILTGEAGVGKTAVVEGLARRIAEKDVPDVLQGVELHVLDMGLLQAGASVKGEFENRLKNVIDEVKKSPHPIILFIDEAHTMIGAGGTAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSETLAAAMLRGMVPLMEKHFGIRVMDEAVTEAVRLSHRYISGRQLPDKAVSVLDTACAKVALGQSATPAIIEDTRKHLDRLAAELAALNRETSGGARHHDARVAELLQAQESARKVLADNQTRLVRERELAERIVALRAQLEAAPAAAEPAAAAAKPARGAAKQATAAASPQHAQLDALLAELGELQGETPMVPLQVDGGVVAEIVSAWTGVPLGRMVKDEIRTVRNLDSLLGERVIGQDHALAAISQRVRTATAKLEDPNKPRGVFLFVGPSGVGKTETALALADILYGGERKLITINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGVMDDAEGREIDFRNTLIILTSNVGSSQIMQACLNKPAEEIPAADALAEALRPIMMRSFKPAFLGRLKVVPYYPISDDVLAQIIALKLGRIRDRVATNHKAAFQWDQSLVEAVLARCTEVDSGARNVDHILNGTLLPEIAESVLAAMAEGGNINAIKVGAGKNGAFKYKLS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9957 - -


  Protein sequence: 911 a.a.    

>T6CP015400 NZ_CP043403:c3506462-3503730 [Xanthomonas oryzae pv. oryzicola] [TssH]
MSINLKTLISKLDDTCRQAAERAANLCMARGNYEVDLEHLFLALLEQPQSDFVLIARRCGISPETLECDLSEEVGRFKAG
NTRTPVFSQHLPTLFEHAWLIASLDSETTRIRSGHLLLALLTEPDLSQLAYRGSKQFVKIKLDALKHDFARLTEGSQEAG
QSLRFADAGQADVGGDPVDGLAGVPDGKGGLTKTPALDQFTTNLVQRARDAQIDPVIGRDGEIRQVIDILMRRRQNNPIL
TGEAGVGKTAVVEGLARRIAEKDVPDVLQGVELHVLDMGLLQAGASVKGEFENRLKNVIDEVKKSPHPIILFIDEAHTMI
GAGGTAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSETLAAAMLRGMVPLMEKHFGIR
VMDEAVTEAVRLSHRYISGRQLPDKAVSVLDTACAKVALGQSATPAIIEDTRKHLDRLAAELAALNRETSGGARHHDARV
AELLQAQESARKVLADNQTRLVRERELAERIVALRAQLEAAPAAAEPAAAAAKPARGAAKQATAAASPQHAQLDALLAEL
GELQGETPMVPLQVDGGVVAEIVSAWTGVPLGRMVKDEIRTVRNLDSLLGERVIGQDHALAAISQRVRTATAKLEDPNKP
RGVFLFVGPSGVGKTETALALADILYGGERKLITINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLD
EVEKAHPDVLEMFFQVFDKGVMDDAEGREIDFRNTLIILTSNVGSSQIMQACLNKPAEEIPAADALAEALRPIMMRSFKP
AFLGRLKVVPYYPISDDVLAQIIALKLGRIRDRVATNHKAAFQWDQSLVEAVLARCTEVDSGARNVDHILNGTLLPEIAE
SVLAAMAEGGNINAIKVGAGKNGAFKYKLS*

  Nucleotide sequence: 2733 bp    

>T6CP015400 NZ_CP043403:c3506462-3503730 [Xanthomonas oryzae pv. oryzicola] [TssH]
ATGAGCATCAATCTCAAGACCCTGATCAGCAAACTCGACGACACCTGCCGGCAGGCGGCCGAGCGCGCGGCCAATCTGTG
CATGGCGCGCGGCAACTACGAAGTCGACCTGGAGCATCTGTTCCTGGCGCTGCTGGAGCAACCGCAAAGCGATTTCGTGC
TGATCGCGCGCCGCTGCGGCATTTCGCCGGAGACGCTGGAATGCGATCTCAGCGAGGAGGTCGGCCGCTTCAAGGCCGGC
AATACGCGCACGCCGGTATTTTCCCAGCACCTGCCCACGCTGTTCGAGCACGCCTGGCTGATCGCCTCGCTGGATTCGGA
AACCACGCGCATCCGCAGCGGTCATCTCCTGCTGGCGCTGCTGACCGAGCCAGACCTGTCGCAGCTGGCCTACCGCGGTT
CCAAGCAGTTCGTGAAGATCAAGCTCGACGCGCTCAAGCACGACTTCGCCCGCCTCACCGAAGGCTCGCAGGAAGCCGGG
CAAAGCCTGCGTTTCGCCGATGCCGGCCAGGCCGACGTCGGCGGCGACCCGGTCGATGGCCTCGCCGGCGTGCCGGACGG
CAAGGGCGGCCTGACCAAGACCCCGGCGCTGGACCAGTTCACCACCAACCTCGTCCAGCGCGCCCGCGATGCGCAGATCG
ACCCGGTGATCGGCCGCGACGGCGAGATCCGCCAGGTGATCGACATCCTGATGCGGCGGCGCCAGAACAATCCGATCCTC
ACCGGCGAAGCCGGCGTCGGCAAGACCGCGGTCGTCGAGGGGCTGGCCCGGCGCATCGCCGAGAAGGACGTGCCGGACGT
GTTGCAGGGGGTGGAACTGCATGTGCTGGACATGGGCTTGCTGCAGGCCGGCGCCAGCGTCAAGGGCGAGTTCGAGAACC
GGCTGAAGAACGTCATCGACGAGGTCAAGAAGAGCCCGCATCCGATCATCCTGTTCATCGACGAGGCGCACACGATGATC
GGTGCCGGCGGGACCGCCGGCCAGAACGACGCGGCGAACCTGCTCAAGCCGGCGCTGGCGCGCGGCGAGCTGCGCACCAT
CGCGGCCACCACCTGGAGCGAATACAAGAAGTACTTCGAGAAGGACGCGGCGCTGGCACGGCGCTTCCAGGTGGTCAAGG
TCGAGGAGCCGAGCGAGACGCTGGCTGCGGCGATGCTGCGCGGCATGGTGCCGCTGATGGAGAAGCACTTCGGCATCCGG
GTGATGGACGAGGCGGTCACCGAGGCGGTGCGCCTGTCGCACCGCTACATCAGCGGCCGCCAGCTGCCGGACAAGGCGGT
CAGCGTGCTCGATACCGCCTGCGCAAAGGTCGCGCTCGGGCAGAGCGCCACCCCGGCGATCATCGAAGACACGCGCAAGC
ACCTGGACCGGCTGGCCGCGGAGTTGGCCGCGTTGAACCGCGAGACGTCCGGCGGCGCCCGCCACCACGACGCGCGCGTG
GCCGAGCTACTGCAAGCGCAGGAAAGCGCACGCAAGGTGCTGGCCGACAACCAGACGCGGCTGGTGCGCGAGCGCGAACT
GGCCGAGCGCATCGTCGCCCTGCGCGCGCAGCTGGAAGCGGCGCCGGCGGCCGCCGAACCCGCGGCCGCCGCCGCCAAGC
CGGCACGCGGCGCGGCGAAGCAGGCCACCGCGGCGGCTTCGCCGCAGCACGCGCAGCTGGACGCGCTGCTCGCCGAGCTG
GGCGAGCTGCAGGGCGAAACCCCGATGGTGCCGCTGCAGGTCGACGGCGGCGTGGTCGCCGAGATCGTCTCGGCCTGGAC
CGGGGTGCCGCTGGGGCGCATGGTCAAGGACGAGATCCGCACCGTGCGCAACCTCGACAGCCTGCTGGGCGAGCGCGTCA
TCGGCCAGGACCATGCGCTGGCCGCGATCTCCCAGCGCGTGCGCACCGCTACCGCCAAGCTGGAAGACCCGAACAAGCCC
CGCGGCGTCTTCCTCTTCGTCGGCCCGTCCGGCGTCGGCAAGACCGAGACCGCGCTGGCGCTGGCCGACATCCTGTACGG
CGGCGAGCGCAAGCTGATCACCATCAACATGAGCGAGTACCAGGAAGCGCACAGCGTGTCCGGGCTGAAGGGCTCTCCGC
CTGGCTACGTCGGCTACGGCGAGGGCGGCGTGCTGACCGAGGCGGTGCGGCGCAACCCGTACAGTGTGGTGCTGCTGGAC
GAGGTGGAGAAAGCACACCCGGACGTGCTGGAGATGTTCTTCCAAGTGTTCGACAAGGGCGTGATGGACGATGCCGAAGG
CCGCGAGATCGACTTCCGCAACACCTTGATCATCCTCACGTCCAATGTCGGTTCCTCGCAGATCATGCAGGCCTGCCTGA
ACAAGCCGGCCGAGGAGATTCCGGCCGCCGACGCATTGGCCGAGGCGTTGCGCCCGATCATGATGCGCAGCTTCAAGCCG
GCCTTCCTCGGCCGGCTGAAGGTGGTGCCGTATTATCCGATCAGTGACGACGTGCTGGCGCAGATCATCGCGCTCAAGCT
CGGCCGCATCCGCGACCGCGTGGCCACCAACCACAAGGCCGCCTTCCAATGGGACCAGAGCCTGGTGGAGGCGGTGTTGG
CGCGCTGTACGGAAGTGGATTCGGGTGCGCGCAACGTCGACCACATTCTGAATGGCACGCTGTTGCCGGAAATCGCCGAG
AGCGTGCTCGCGGCGATGGCCGAAGGCGGCAACATCAACGCCATCAAGGTAGGCGCCGGCAAGAACGGCGCGTTCAAATA
CAAGTTATCCTGA