Detailed information of component protein


Summary

Component ID T6CP015399
Component protein type TssI
T6SS ID (Type) T6SS01218 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzicola strain GX01
Replicon chromosome
Sequence Protein sequence (920 a.a.); Nucleotide sequence (2760 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XOCgx_RS16445
Coordinate (Strand) 3500494..3503253 (-)
NCBI ID WP_149621757.1
RefSeq NZ_CP043403
Uniprot ID UPI0011F0AB8C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.8e-72 46..354
DUF2345 PF10106.11 3.9e-32 724..885
T6SS_Vgr PF13296.8 3.6e-26 583..682
Phage_base_V PF04717.14 2.4e-11 485..531
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-919 MDPVATVLSALAAPHQQERLLRLHTPLGPDVLVAETLDGRESVDGGGFRFDVGALSANAGLPLDDLLGQPVLLELLTAESRTALRPFHGHVTAFERLGSNGGLARYRLVVEPWLALLAQRVDSYVFQDMSVMEIAESVFADYAGQGALAPAWRWELSDRSTYARRSLTTQYEETDFAFLSRLLAEEGIAYWFEHTGAADSDTRGTHTLVLSDHNAAFADLGTVRYHRTDVTEQQDSVQQWVQAHRWRATSLSRASWDYRSRSLRLAGAEGTPLGDIGAEDVDTAGPYGWQDSTRGQRRAQQHLDAQQVTAQTIQGQGTWRQLAPGTRFGLRQHAVVAADAAFLCLQVRHQARNNLGAEVFDALEQALGAVAVAGAPLPPALAGLSGGYVPAQDEAAVEFYRNQFTAIPATATYRPQTEDGHGVRLHPKPTVVGTLSAIVVSDGDPVQSDRDHRIKVQFPFQRGADASSALAHPGGEDNAPGSASAWTWVRVMTPWAGDNWGGVVLPRKGQEVLVGFLEGDIDRPVVIGSVYNGRGQDDAAHNQVGGGGAGATGNAPAWFQGNAHGAVFTGFKSQALAQSQDGTGGYQQLRLDDTPGQGRAQLSTTQHASTLTLGHLKGGHDNLREGERGYGADLSTQAYGAVRAGQGLLLSSEPGNTQLAATGALSQLQQGSDLLKRLNDAARTQQAGLPSEPESLPTQDGLKTLQDHLQATHSGSAAGAIGGGAGEVPGWSAPVLLGSGQAGVMSLTPADQVWVSGTQTALLAGSALNWLSQGHLVLAVAGGLVLYTQGSDPVAGSPNQERGIALHAAQGTLSARAHRSTATLAAKTQVRIVSTTADVQLAAPTKHLLATAAGAYIKLDGDDIELGAPGVVAFKGGQQVLTGPQGSTASVSIPQAQFKGCDPTLVNAQLRSEAAADLG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9024 - -


  Protein sequence: 920 a.a.    

>T6CP015399 NZ_CP043403:c3503253-3500494 [Xanthomonas oryzae pv. oryzicola] [TssI]
MDPVATVLSALAAPHQQERLLRLHTPLGPDVLVAETLDGRESVDGGGFRFDVGALSANAGLPLDDLLGQPVLLELLTAES
RTALRPFHGHVTAFERLGSNGGLARYRLVVEPWLALLAQRVDSYVFQDMSVMEIAESVFADYAGQGALAPAWRWELSDRS
TYARRSLTTQYEETDFAFLSRLLAEEGIAYWFEHTGAADSDTRGTHTLVLSDHNAAFADLGTVRYHRTDVTEQQDSVQQW
VQAHRWRATSLSRASWDYRSRSLRLAGAEGTPLGDIGAEDVDTAGPYGWQDSTRGQRRAQQHLDAQQVTAQTIQGQGTWR
QLAPGTRFGLRQHAVVAADAAFLCLQVRHQARNNLGAEVFDALEQALGAVAVAGAPLPPALAGLSGGYVPAQDEAAVEFY
RNQFTAIPATATYRPQTEDGHGVRLHPKPTVVGTLSAIVVSDGDPVQSDRDHRIKVQFPFQRGADASSALAHPGGEDNAP
GSASAWTWVRVMTPWAGDNWGGVVLPRKGQEVLVGFLEGDIDRPVVIGSVYNGRGQDDAAHNQVGGGGAGATGNAPAWFQ
GNAHGAVFTGFKSQALAQSQDGTGGYQQLRLDDTPGQGRAQLSTTQHASTLTLGHLKGGHDNLREGERGYGADLSTQAYG
AVRAGQGLLLSSEPGNTQLAATGALSQLQQGSDLLKRLNDAARTQQAGLPSEPESLPTQDGLKTLQDHLQATHSGSAAGA
IGGGAGEVPGWSAPVLLGSGQAGVMSLTPADQVWVSGTQTALLAGSALNWLSQGHLVLAVAGGLVLYTQGSDPVAGSPNQ
ERGIALHAAQGTLSARAHRSTATLAAKTQVRIVSTTADVQLAAPTKHLLATAAGAYIKLDGDDIELGAPGVVAFKGGQQV
LTGPQGSTASVSIPQAQFKGCDPTLVNAQLRSEAAADLG*

  Nucleotide sequence: 2760 bp    

>T6CP015399 NZ_CP043403:c3503253-3500494 [Xanthomonas oryzae pv. oryzicola] [TssI]
ATGGACCCGGTCGCTACCGTTCTTTCCGCATTGGCCGCCCCGCACCAGCAAGAACGCCTGCTGCGGTTGCACACCCCGCT
GGGCCCCGACGTGCTGGTTGCCGAGACCCTGGATGGCCGCGAGTCGGTCGATGGCGGCGGCTTCCGTTTTGACGTGGGCG
CACTATCGGCCAACGCCGGCCTGCCGCTGGACGACCTGCTCGGCCAGCCGGTGCTGCTGGAACTGCTCACCGCCGAGTCG
CGCACCGCGCTGCGCCCGTTCCACGGCCATGTCACCGCGTTCGAACGCCTCGGCAGCAACGGCGGCCTGGCGCGCTACCG
GCTGGTGGTGGAGCCGTGGCTGGCGCTGCTGGCCCAGCGCGTGGACAGCTACGTGTTCCAGGACATGAGCGTGATGGAGA
TCGCCGAGAGCGTGTTCGCCGACTACGCCGGGCAAGGCGCGCTGGCGCCGGCGTGGCGCTGGGAGCTGTCCGACCGCAGC
ACGTACGCCAGGCGCAGCCTGACCACGCAATACGAAGAGACCGACTTCGCGTTCCTGAGCCGGCTGCTGGCCGAGGAAGG
CATCGCCTATTGGTTCGAGCACACCGGCGCAGCCGACAGCGATACGCGCGGCACGCACACGCTGGTGCTGTCGGACCATA
ACGCCGCCTTCGCCGACCTGGGCACGGTGCGCTACCACCGCACCGACGTCACCGAGCAGCAGGACAGCGTGCAGCAGTGG
GTACAGGCACATCGCTGGCGCGCGACCAGTCTGTCGCGGGCCAGCTGGGACTACCGCAGCCGCAGCCTGCGCCTGGCCGG
TGCCGAAGGCACGCCGCTGGGCGACATCGGTGCCGAGGACGTGGACACCGCCGGCCCCTACGGCTGGCAGGACAGCACGC
GCGGCCAGCGCCGCGCGCAGCAGCATCTGGATGCGCAGCAGGTGACGGCGCAGACCATCCAGGGCCAGGGGACCTGGCGG
CAACTGGCACCGGGCACGCGTTTCGGGCTGCGCCAGCATGCGGTCGTGGCGGCCGATGCGGCGTTCCTGTGCCTGCAGGT
GCGGCACCAGGCGCGCAACAATCTGGGCGCGGAGGTGTTCGACGCGCTGGAGCAGGCGCTGGGCGCGGTGGCGGTGGCCG
GCGCGCCGCTGCCGCCGGCGCTGGCAGGCCTGAGCGGCGGATATGTGCCGGCGCAGGATGAGGCGGCGGTAGAGTTCTAC
CGCAACCAGTTCACCGCCATACCGGCCACCGCGACCTACCGGCCGCAAACCGAGGACGGCCACGGCGTGCGCCTGCATCC
CAAGCCAACGGTCGTCGGCACGCTGAGCGCGATCGTGGTCAGCGACGGCGACCCGGTGCAGTCCGACCGCGACCACCGGA
TCAAGGTGCAGTTCCCGTTCCAGCGCGGGGCCGACGCCAGCAGCGCGCTGGCGCATCCGGGGGGCGAGGACAACGCGCCG
GGCAGCGCCTCGGCGTGGACCTGGGTGCGGGTGATGACGCCGTGGGCCGGGGACAACTGGGGCGGCGTGGTGCTGCCGCG
CAAGGGCCAGGAAGTGCTGGTGGGGTTCCTGGAAGGGGACATCGACCGGCCGGTGGTGATCGGCAGCGTGTACAACGGGC
GCGGCCAGGACGACGCGGCGCACAACCAGGTCGGCGGCGGCGGGGCCGGTGCCACCGGCAATGCGCCGGCGTGGTTCCAG
GGCAACGCGCACGGCGCGGTGTTCACCGGGTTCAAGAGCCAGGCGCTGGCGCAGAGCCAGGACGGCACCGGCGGCTACCA
GCAGCTGCGGCTGGACGACACGCCCGGCCAGGGCCGCGCGCAGCTGTCGACCACCCAGCACGCCAGCACCTTGACCCTGG
GCCACCTGAAGGGCGGCCACGACAACCTGCGCGAAGGCGAGCGCGGGTACGGGGCGGACCTGTCCACGCAGGCCTACGGC
GCGGTGCGCGCCGGCCAGGGCCTGCTGCTGAGCAGCGAGCCGGGCAACACCCAACTGGCCGCCACCGGCGCGCTGAGCCA
ACTGCAGCAGGGCAGCGACCTGCTCAAGCGCCTCAACGACGCCGCCCGCACCCAGCAGGCGGGCCTACCGAGCGAACCGG
AGTCCCTGCCGACCCAGGACGGCCTGAAGACCTTGCAGGACCACCTGCAGGCCACCCACAGCGGCAGCGCGGCCGGCGCG
ATCGGCGGTGGTGCCGGCGAGGTGCCCGGCTGGAGCGCCCCAGTGCTGCTGGGCAGCGGCCAGGCCGGCGTGATGAGCCT
GACCCCGGCCGACCAGGTGTGGGTGTCGGGCACCCAGACCGCGCTGCTGGCCGGCAGCGCACTGAACTGGCTGAGCCAGG
GCCACCTGGTGCTGGCGGTGGCCGGCGGGCTGGTGCTGTACACCCAGGGCAGCGACCCGGTCGCCGGCAGCCCCAACCAG
GAGCGCGGCATCGCCCTGCACGCCGCGCAAGGCACGCTCAGCGCCCGCGCGCACAGGAGCACCGCCACCCTGGCCGCCAA
GACCCAGGTGCGCATCGTCAGCACCACCGCCGACGTCCAGCTCGCCGCGCCGACCAAGCACCTGCTGGCCACCGCGGCCG
GCGCCTACATCAAGCTGGACGGCGACGACATCGAACTGGGCGCGCCGGGGGTGGTCGCGTTCAAGGGCGGGCAGCAGGTG
TTGACCGGGCCGCAGGGCAGCACCGCGTCGGTGTCCATCCCGCAGGCGCAGTTCAAGGGCTGCGATCCGACATTGGTCAA
TGCGCAGCTTCGCTCCGAAGCCGCCGCAGACCTAGGATGA