Detailed information of component protein
Summary
External database links
Locus tag (Gene) | Y880_RS05395 |
Coordinate (Strand) | 1132058..1133389 (+) |
NCBI ID | WP_016253578.1 |
RefSeq | NZ_CP020659 |
Uniprot ID | UPI00033FB806 |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VasE | PF05936.14 | 5.6e-142 | 18..441 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-443 | MNVHKIVWQEGMLLRPQHLQHNDRYYDNQMKARTQLLGSYNWGFLALELDRQFLNMGKLVISQASGVLPDGSLFELGGNTEPLALDVPPNTSNVPIYLALPLVTGNHIEARRPEQAEVLARYTAYDLEVADSNAGEDSMVQVSCARPDFRLLLGEQQSDQAYVKLKVAVVLDTTPDGVISLDPDFVPSYLHAHASAYLLSCLKEVISMLGHRGDTIADRIRSNGKVGGAEVGDFMMLQLINRTELLLRHYLGLEQVHPEQLYRVLLTMLGDLATFGSESKRPRLDSRYQHSDQGASFRRLMEAIRQVLSMVLEQHAIELPLQARQYGILVSPLHDHKLLGSASFVLAASANCESEELRQRLPAHLKVGAVEHIRQLVNLHLPGIRVKPLPVAPRQIPFHSNKTYFILEPNAEDMTQLERSGGFAFHVSGEFSELELKFWAIRN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9641 | - | - |
Protein sequence: 444 a.a.
>T6CP015331 NZ_CP020659:1132058-1133389 [Pseudomonas aeruginosa PAK] [TssK]
MNVHKIVWQEGMLLRPQHLQHNDRYYDNQMKARTQLLGSYNWGFLALELDRQFLNMGKLVISQASGVLPDGSLFELGGNT
EPLALDVPPNTSNVPIYLALPLVTGNHIEARRPEQAEVLARYTAYDLEVADSNAGEDSMVQVSCARPDFRLLLGEQQSDQ
AYVKLKVAVVLDTTPDGVISLDPDFVPSYLHAHASAYLLSCLKEVISMLGHRGDTIADRIRSNGKVGGAEVGDFMMLQLI
NRTELLLRHYLGLEQVHPEQLYRVLLTMLGDLATFGSESKRPRLDSRYQHSDQGASFRRLMEAIRQVLSMVLEQHAIELP
LQARQYGILVSPLHDHKLLGSASFVLAASANCESEELRQRLPAHLKVGAVEHIRQLVNLHLPGIRVKPLPVAPRQIPFHS
NKTYFILEPNAEDMTQLERSGGFAFHVSGEFSELELKFWAIRN*
MNVHKIVWQEGMLLRPQHLQHNDRYYDNQMKARTQLLGSYNWGFLALELDRQFLNMGKLVISQASGVLPDGSLFELGGNT
EPLALDVPPNTSNVPIYLALPLVTGNHIEARRPEQAEVLARYTAYDLEVADSNAGEDSMVQVSCARPDFRLLLGEQQSDQ
AYVKLKVAVVLDTTPDGVISLDPDFVPSYLHAHASAYLLSCLKEVISMLGHRGDTIADRIRSNGKVGGAEVGDFMMLQLI
NRTELLLRHYLGLEQVHPEQLYRVLLTMLGDLATFGSESKRPRLDSRYQHSDQGASFRRLMEAIRQVLSMVLEQHAIELP
LQARQYGILVSPLHDHKLLGSASFVLAASANCESEELRQRLPAHLKVGAVEHIRQLVNLHLPGIRVKPLPVAPRQIPFHS
NKTYFILEPNAEDMTQLERSGGFAFHVSGEFSELELKFWAIRN*
Nucleotide sequence: 1332 bp
>T6CP015331 NZ_CP020659:1132058-1133389 [Pseudomonas aeruginosa PAK] [TssK]
ATGAACGTGCACAAGATCGTCTGGCAGGAAGGCATGCTGCTGCGCCCGCAGCACCTGCAACACAACGACCGCTACTACGA
CAACCAGATGAAGGCCCGGACCCAGTTGCTGGGCAGCTACAACTGGGGCTTCCTCGCCCTGGAGCTGGACCGCCAGTTCC
TCAACATGGGCAAGCTGGTGATCAGCCAGGCCTCCGGCGTACTGCCCGACGGCAGTCTGTTCGAACTCGGCGGCAACACC
GAGCCGCTCGCCCTCGACGTGCCGCCCAATACCTCGAACGTGCCGATCTACCTGGCCCTGCCGCTGGTCACCGGCAACCA
CATCGAGGCGCGCCGGCCGGAGCAGGCCGAGGTCCTGGCGCGCTATACCGCCTACGACCTGGAGGTGGCGGACTCCAACG
CCGGCGAGGATTCCATGGTGCAGGTCAGCTGCGCGCGGCCGGATTTTCGCCTGCTGCTCGGCGAGCAGCAGAGCGACCAG
GCCTACGTCAAACTGAAGGTGGCGGTGGTGCTGGATACCACGCCGGACGGGGTGATCAGCCTCGATCCCGACTTCGTGCC
GAGCTACCTCCACGCCCACGCATCCGCCTACCTGCTGTCCTGCCTGAAGGAGGTGATCAGCATGCTCGGCCATCGCGGCG
ACACCATCGCCGACCGTATCCGGTCCAATGGCAAGGTCGGCGGCGCGGAGGTCGGCGATTTCATGATGCTGCAACTGATC
AATCGCACCGAGTTGCTGCTGCGCCACTACCTGGGATTGGAGCAGGTGCATCCGGAGCAGTTGTACCGGGTGCTGCTGAC
CATGCTCGGCGACCTCGCCACCTTCGGCAGCGAGAGCAAGCGTCCGCGCCTGGACAGCCGTTACCAGCACAGCGACCAGG
GCGCCAGCTTCCGCAGGCTGATGGAGGCGATCCGCCAGGTCTTGTCGATGGTGCTCGAGCAGCATGCCATCGAACTGCCT
CTCCAGGCCCGCCAGTACGGCATCCTGGTCTCGCCCCTGCACGACCACAAGCTGCTCGGCAGCGCCTCGTTCGTGCTCGC
CGCCAGTGCCAATTGCGAGTCGGAGGAACTGCGCCAGCGCCTGCCCGCGCATCTCAAGGTGGGTGCGGTCGAGCACATTC
GCCAACTGGTCAACCTGCACCTGCCGGGGATCCGGGTCAAGCCGCTGCCGGTGGCGCCGCGGCAGATCCCGTTCCACTCC
AACAAGACCTATTTCATTCTCGAACCCAACGCCGAGGACATGACCCAGCTGGAGCGCTCCGGCGGTTTCGCGTTCCACGT
ATCCGGCGAGTTCTCCGAGCTTGAACTGAAATTCTGGGCCATCAGGAACTGA
ATGAACGTGCACAAGATCGTCTGGCAGGAAGGCATGCTGCTGCGCCCGCAGCACCTGCAACACAACGACCGCTACTACGA
CAACCAGATGAAGGCCCGGACCCAGTTGCTGGGCAGCTACAACTGGGGCTTCCTCGCCCTGGAGCTGGACCGCCAGTTCC
TCAACATGGGCAAGCTGGTGATCAGCCAGGCCTCCGGCGTACTGCCCGACGGCAGTCTGTTCGAACTCGGCGGCAACACC
GAGCCGCTCGCCCTCGACGTGCCGCCCAATACCTCGAACGTGCCGATCTACCTGGCCCTGCCGCTGGTCACCGGCAACCA
CATCGAGGCGCGCCGGCCGGAGCAGGCCGAGGTCCTGGCGCGCTATACCGCCTACGACCTGGAGGTGGCGGACTCCAACG
CCGGCGAGGATTCCATGGTGCAGGTCAGCTGCGCGCGGCCGGATTTTCGCCTGCTGCTCGGCGAGCAGCAGAGCGACCAG
GCCTACGTCAAACTGAAGGTGGCGGTGGTGCTGGATACCACGCCGGACGGGGTGATCAGCCTCGATCCCGACTTCGTGCC
GAGCTACCTCCACGCCCACGCATCCGCCTACCTGCTGTCCTGCCTGAAGGAGGTGATCAGCATGCTCGGCCATCGCGGCG
ACACCATCGCCGACCGTATCCGGTCCAATGGCAAGGTCGGCGGCGCGGAGGTCGGCGATTTCATGATGCTGCAACTGATC
AATCGCACCGAGTTGCTGCTGCGCCACTACCTGGGATTGGAGCAGGTGCATCCGGAGCAGTTGTACCGGGTGCTGCTGAC
CATGCTCGGCGACCTCGCCACCTTCGGCAGCGAGAGCAAGCGTCCGCGCCTGGACAGCCGTTACCAGCACAGCGACCAGG
GCGCCAGCTTCCGCAGGCTGATGGAGGCGATCCGCCAGGTCTTGTCGATGGTGCTCGAGCAGCATGCCATCGAACTGCCT
CTCCAGGCCCGCCAGTACGGCATCCTGGTCTCGCCCCTGCACGACCACAAGCTGCTCGGCAGCGCCTCGTTCGTGCTCGC
CGCCAGTGCCAATTGCGAGTCGGAGGAACTGCGCCAGCGCCTGCCCGCGCATCTCAAGGTGGGTGCGGTCGAGCACATTC
GCCAACTGGTCAACCTGCACCTGCCGGGGATCCGGGTCAAGCCGCTGCCGGTGGCGCCGCGGCAGATCCCGTTCCACTCC
AACAAGACCTATTTCATTCTCGAACCCAACGCCGAGGACATGACCCAGCTGGAGCGCTCCGGCGGTTTCGCGTTCCACGT
ATCCGGCGAGTTCTCCGAGCTTGAACTGAAATTCTGGGCCATCAGGAACTGA