Detailed information of component protein
Summary
External database links
Locus tag (Gene) | Y880_RS05335 |
Coordinate (Strand) | 1118829..1120385 (+) |
NCBI ID | WP_016253581.1 |
RefSeq | NZ_CP020659 |
Uniprot ID | UPI00033C0F2A |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VasJ | PF16989.7 | 3.5e-81 | 225..483 |
ImpA_N | PF06812.14 | 2.8e-30 | 17..127 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-518 | MTYSSKLSSHYLELAEQPISKDVFAGEDVRFSSEYEALENELGKALSLHENGQTDWLKILENSEALLRAQSKDLRVAAWLTWALYQRESFPGLLAGLGLLERLCSRHWVEIHPLKARTRAAAIAWLVPRLEQALNENVPIKEQLPLFRRLAEHLEKLDTALTAQLGDDAPLLLPISRRLSGMLQRAADNQPEPGVVGAVVAQVKQAASQLLAPGAPIDNERDAHKAMRAQQEAARPLCAWWLKQKATDLRALRLNRTILWLPIESMPERNAEQVTALRGVPADKLKSYQERFAQGLYADLLVELEASLARAPFWFDGQRLVWECLQGLNAEQAMREVEMHFALLLQRLPGLVELRFHDGSAFADAATRGWISAHVMPHLQNDSAPRKVETVALQAEWDVALDEVQPVLRKDGLKAAVQVLKQGMKRAHGGRARFFWQLSLARLCFLAKKYELAKTQLESLDHQLHESGLHAWEPDLALDVLHLLHSCCELLPQNHAVRERKEDIYRRLCHLDLEVVLE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9932 | - | - |
Protein sequence: 519 a.a.
>T6CP015323 NZ_CP020659:1118829-1120385 [Pseudomonas aeruginosa PAK] [TssA]
MTYSSKLSSHYLELAEQPISKDVFAGEDVRFSSEYEALENELGKALSLHENGQTDWLKILENSEALLRAQSKDLRVAAWL
TWALYQRESFPGLLAGLGLLERLCSRHWVEIHPLKARTRAAAIAWLVPRLEQALNENVPIKEQLPLFRRLAEHLEKLDTA
LTAQLGDDAPLLLPISRRLSGMLQRAADNQPEPGVVGAVVAQVKQAASQLLAPGAPIDNERDAHKAMRAQQEAARPLCAW
WLKQKATDLRALRLNRTILWLPIESMPERNAEQVTALRGVPADKLKSYQERFAQGLYADLLVELEASLARAPFWFDGQRL
VWECLQGLNAEQAMREVEMHFALLLQRLPGLVELRFHDGSAFADAATRGWISAHVMPHLQNDSAPRKVETVALQAEWDVA
LDEVQPVLRKDGLKAAVQVLKQGMKRAHGGRARFFWQLSLARLCFLAKKYELAKTQLESLDHQLHESGLHAWEPDLALDV
LHLLHSCCELLPQNHAVRERKEDIYRRLCHLDLEVVLE*
MTYSSKLSSHYLELAEQPISKDVFAGEDVRFSSEYEALENELGKALSLHENGQTDWLKILENSEALLRAQSKDLRVAAWL
TWALYQRESFPGLLAGLGLLERLCSRHWVEIHPLKARTRAAAIAWLVPRLEQALNENVPIKEQLPLFRRLAEHLEKLDTA
LTAQLGDDAPLLLPISRRLSGMLQRAADNQPEPGVVGAVVAQVKQAASQLLAPGAPIDNERDAHKAMRAQQEAARPLCAW
WLKQKATDLRALRLNRTILWLPIESMPERNAEQVTALRGVPADKLKSYQERFAQGLYADLLVELEASLARAPFWFDGQRL
VWECLQGLNAEQAMREVEMHFALLLQRLPGLVELRFHDGSAFADAATRGWISAHVMPHLQNDSAPRKVETVALQAEWDVA
LDEVQPVLRKDGLKAAVQVLKQGMKRAHGGRARFFWQLSLARLCFLAKKYELAKTQLESLDHQLHESGLHAWEPDLALDV
LHLLHSCCELLPQNHAVRERKEDIYRRLCHLDLEVVLE*
Nucleotide sequence: 1557 bp
>T6CP015323 NZ_CP020659:1118829-1120385 [Pseudomonas aeruginosa PAK] [TssA]
ATGACCTATTCGAGCAAGCTCTCCTCGCATTATCTGGAACTCGCGGAACAGCCGATTTCAAAGGATGTCTTTGCGGGTGA
GGATGTGCGTTTTTCCAGCGAATACGAGGCGCTGGAAAATGAGCTGGGCAAGGCGCTCTCGCTCCATGAGAACGGCCAGA
CCGACTGGTTGAAAATCCTGGAAAACAGCGAAGCGCTGCTTCGTGCCCAATCCAAGGACCTGCGTGTTGCAGCCTGGTTG
ACCTGGGCCCTCTACCAACGGGAATCCTTTCCCGGTTTGCTGGCCGGACTGGGATTGCTGGAACGTCTGTGCAGCCGGCA
TTGGGTCGAGATCCATCCGCTCAAGGCGCGCACTCGCGCCGCGGCCATTGCCTGGCTGGTGCCCCGGCTGGAGCAGGCGC
TGAACGAGAACGTACCGATCAAGGAGCAACTCCCCCTGTTCCGGCGTCTCGCCGAGCACCTGGAAAAACTCGATACCGCG
CTGACCGCGCAACTGGGCGACGACGCGCCCTTGTTGCTGCCGATCAGCCGACGCCTTTCGGGCATGCTCCAGCGCGCCGC
CGACAACCAGCCCGAACCTGGCGTGGTCGGCGCCGTGGTGGCCCAGGTCAAGCAGGCGGCCAGCCAGTTGCTGGCGCCGG
GTGCGCCCATCGACAACGAGCGCGACGCCCACAAGGCCATGCGCGCCCAGCAGGAGGCCGCACGCCCCCTATGCGCCTGG
TGGCTGAAGCAGAAAGCCACCGATCTGCGCGCGCTGCGCCTCAACCGAACGATACTCTGGCTGCCCATCGAGTCCATGCC
CGAGCGCAATGCCGAACAGGTCACCGCGCTAAGGGGAGTGCCGGCGGACAAGCTGAAAAGCTACCAGGAGCGTTTCGCCC
AGGGCCTGTACGCCGATCTCCTGGTGGAGCTGGAGGCGAGCCTGGCACGGGCGCCGTTCTGGTTCGACGGCCAGCGCCTG
GTCTGGGAGTGCCTGCAAGGGCTCAACGCCGAGCAGGCGATGCGGGAAGTCGAAATGCATTTCGCCTTGCTCCTGCAGCG
TCTGCCGGGGCTGGTGGAGCTGCGTTTCCACGATGGCAGCGCATTCGCCGATGCGGCCACCCGCGGCTGGATCAGCGCCC
ATGTCATGCCCCATCTCCAGAACGACAGTGCGCCGCGCAAGGTCGAGACCGTGGCCCTGCAGGCCGAATGGGACGTCGCC
CTGGACGAGGTCCAGCCGGTGTTGCGCAAGGACGGCCTGAAGGCGGCGGTACAGGTGTTGAAGCAGGGCATGAAGCGCGC
CCACGGCGGGCGCGCCCGGTTCTTCTGGCAACTGAGCCTCGCGCGACTGTGCTTCCTGGCGAAGAAGTACGAGCTGGCCA
AGACCCAGCTGGAGAGCCTCGACCATCAGTTGCACGAATCGGGATTGCACGCCTGGGAGCCCGATCTGGCGCTGGATGTA
CTGCACCTGCTGCATAGCTGCTGCGAGCTGTTGCCGCAGAACCACGCCGTGCGAGAACGCAAGGAAGACATTTATCGCAG
GCTGTGCCACCTCGATCTCGAGGTGGTGCTCGAATAG
ATGACCTATTCGAGCAAGCTCTCCTCGCATTATCTGGAACTCGCGGAACAGCCGATTTCAAAGGATGTCTTTGCGGGTGA
GGATGTGCGTTTTTCCAGCGAATACGAGGCGCTGGAAAATGAGCTGGGCAAGGCGCTCTCGCTCCATGAGAACGGCCAGA
CCGACTGGTTGAAAATCCTGGAAAACAGCGAAGCGCTGCTTCGTGCCCAATCCAAGGACCTGCGTGTTGCAGCCTGGTTG
ACCTGGGCCCTCTACCAACGGGAATCCTTTCCCGGTTTGCTGGCCGGACTGGGATTGCTGGAACGTCTGTGCAGCCGGCA
TTGGGTCGAGATCCATCCGCTCAAGGCGCGCACTCGCGCCGCGGCCATTGCCTGGCTGGTGCCCCGGCTGGAGCAGGCGC
TGAACGAGAACGTACCGATCAAGGAGCAACTCCCCCTGTTCCGGCGTCTCGCCGAGCACCTGGAAAAACTCGATACCGCG
CTGACCGCGCAACTGGGCGACGACGCGCCCTTGTTGCTGCCGATCAGCCGACGCCTTTCGGGCATGCTCCAGCGCGCCGC
CGACAACCAGCCCGAACCTGGCGTGGTCGGCGCCGTGGTGGCCCAGGTCAAGCAGGCGGCCAGCCAGTTGCTGGCGCCGG
GTGCGCCCATCGACAACGAGCGCGACGCCCACAAGGCCATGCGCGCCCAGCAGGAGGCCGCACGCCCCCTATGCGCCTGG
TGGCTGAAGCAGAAAGCCACCGATCTGCGCGCGCTGCGCCTCAACCGAACGATACTCTGGCTGCCCATCGAGTCCATGCC
CGAGCGCAATGCCGAACAGGTCACCGCGCTAAGGGGAGTGCCGGCGGACAAGCTGAAAAGCTACCAGGAGCGTTTCGCCC
AGGGCCTGTACGCCGATCTCCTGGTGGAGCTGGAGGCGAGCCTGGCACGGGCGCCGTTCTGGTTCGACGGCCAGCGCCTG
GTCTGGGAGTGCCTGCAAGGGCTCAACGCCGAGCAGGCGATGCGGGAAGTCGAAATGCATTTCGCCTTGCTCCTGCAGCG
TCTGCCGGGGCTGGTGGAGCTGCGTTTCCACGATGGCAGCGCATTCGCCGATGCGGCCACCCGCGGCTGGATCAGCGCCC
ATGTCATGCCCCATCTCCAGAACGACAGTGCGCCGCGCAAGGTCGAGACCGTGGCCCTGCAGGCCGAATGGGACGTCGCC
CTGGACGAGGTCCAGCCGGTGTTGCGCAAGGACGGCCTGAAGGCGGCGGTACAGGTGTTGAAGCAGGGCATGAAGCGCGC
CCACGGCGGGCGCGCCCGGTTCTTCTGGCAACTGAGCCTCGCGCGACTGTGCTTCCTGGCGAAGAAGTACGAGCTGGCCA
AGACCCAGCTGGAGAGCCTCGACCATCAGTTGCACGAATCGGGATTGCACGCCTGGGAGCCCGATCTGGCGCTGGATGTA
CTGCACCTGCTGCATAGCTGCTGCGAGCTGTTGCCGCAGAACCACGCCGTGCGAGAACGCAAGGAAGACATTTATCGCAG
GCTGTGCCACCTCGATCTCGAGGTGGTGCTCGAATAG