Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PFL_RS30815 |
Coordinate (Strand) | 6902924..6903658 (-) |
NCBI ID | WP_011064247.1 |
RefSeq | NC_004129 |
Uniprot ID | A0A2C9EVQ5_PSEPH, A0A1K2AB20_9PSED, A0A2T0Z775_9PSED, Q4K3P6_PSEF5 |
KEGG ID | pprc:PFLCHA0_c60380, pfl:PFL_6079 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
PP2C_2 | PF13672.8 | 2.7e-11 | 22..212 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-244 | MRSAPQLSYQSASYSHVGMVRKINEDAWLEAPETGLWLVADGMGGHAAGDYVSSLIVDSLRAVPAADSLDDYVAALRNGLAAVNAAVREETANRGVTMMGSTVVLLAVRGARAVCLWAGDSRLYRLRDEQLEGISRDHSYVQDLQDSGLLSEAEARVHPRANIVTRAIGVEAQLELSQIDLQVQDGDTFLLCSDGLNKTAEDFELRDVLSHSEPNDVVRSLIHLGLTRGAPDNITAIVIKAAGH |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9830 | - | - |
Protein sequence: 245 a.a.
>T6CP012433 NC_004129:c6903658-6902924 [Pseudomonas protegens Pf-5] [PppA]
MRSAPQLSYQSASYSHVGMVRKINEDAWLEAPETGLWLVADGMGGHAAGDYVSSLIVDSLRAVPAADSLDDYVAALRNGL
AAVNAAVREETANRGVTMMGSTVVLLAVRGARAVCLWAGDSRLYRLRDEQLEGISRDHSYVQDLQDSGLLSEAEARVHPR
ANIVTRAIGVEAQLELSQIDLQVQDGDTFLLCSDGLNKTAEDFELRDVLSHSEPNDVVRSLIHLGLTRGAPDNITAIVIK
AAGH*
MRSAPQLSYQSASYSHVGMVRKINEDAWLEAPETGLWLVADGMGGHAAGDYVSSLIVDSLRAVPAADSLDDYVAALRNGL
AAVNAAVREETANRGVTMMGSTVVLLAVRGARAVCLWAGDSRLYRLRDEQLEGISRDHSYVQDLQDSGLLSEAEARVHPR
ANIVTRAIGVEAQLELSQIDLQVQDGDTFLLCSDGLNKTAEDFELRDVLSHSEPNDVVRSLIHLGLTRGAPDNITAIVIK
AAGH*
Nucleotide sequence: 735 bp
>T6CP012433 NC_004129:c6903658-6902924 [Pseudomonas protegens Pf-5] [PppA]
ATGCGTTCAGCGCCGCAACTGTCCTACCAGTCCGCCAGCTACAGCCATGTCGGCATGGTGCGGAAAATCAATGAAGACGC
CTGGCTCGAAGCCCCGGAGACCGGCCTGTGGCTGGTGGCCGACGGTATGGGCGGGCACGCCGCCGGGGACTATGTCAGCA
GCCTGATCGTCGACAGCCTGCGGGCGGTTCCGGCCGCCGACAGCCTGGACGACTATGTCGCCGCGCTGCGCAACGGCCTG
GCCGCGGTCAACGCCGCGGTGCGCGAGGAAACCGCCAACCGTGGGGTGACCATGATGGGCAGCACCGTGGTGCTGCTGGC
GGTACGCGGGGCCCGGGCCGTGTGCCTGTGGGCCGGCGACAGCCGCCTGTACCGGTTGCGGGACGAACAGCTGGAAGGCA
TTTCCCGGGACCACAGCTACGTCCAGGACCTGCAGGACAGCGGCCTGCTCAGCGAGGCCGAGGCGCGGGTGCACCCGCGG
GCCAACATCGTGACCCGGGCGATTGGCGTCGAGGCCCAGCTGGAGCTGTCCCAGATTGACCTGCAGGTGCAGGACGGCGA
CACCTTCCTGCTGTGCAGCGACGGCCTGAACAAGACCGCCGAGGACTTTGAGCTGCGTGACGTGCTCAGCCACAGCGAGC
CCAATGACGTGGTGCGCAGCCTGATCCACCTGGGCCTGACCCGGGGCGCTCCGGACAACATCACCGCCATCGTGATCAAG
GCCGCAGGACACTGA
ATGCGTTCAGCGCCGCAACTGTCCTACCAGTCCGCCAGCTACAGCCATGTCGGCATGGTGCGGAAAATCAATGAAGACGC
CTGGCTCGAAGCCCCGGAGACCGGCCTGTGGCTGGTGGCCGACGGTATGGGCGGGCACGCCGCCGGGGACTATGTCAGCA
GCCTGATCGTCGACAGCCTGCGGGCGGTTCCGGCCGCCGACAGCCTGGACGACTATGTCGCCGCGCTGCGCAACGGCCTG
GCCGCGGTCAACGCCGCGGTGCGCGAGGAAACCGCCAACCGTGGGGTGACCATGATGGGCAGCACCGTGGTGCTGCTGGC
GGTACGCGGGGCCCGGGCCGTGTGCCTGTGGGCCGGCGACAGCCGCCTGTACCGGTTGCGGGACGAACAGCTGGAAGGCA
TTTCCCGGGACCACAGCTACGTCCAGGACCTGCAGGACAGCGGCCTGCTCAGCGAGGCCGAGGCGCGGGTGCACCCGCGG
GCCAACATCGTGACCCGGGCGATTGGCGTCGAGGCCCAGCTGGAGCTGTCCCAGATTGACCTGCAGGTGCAGGACGGCGA
CACCTTCCTGCTGTGCAGCGACGGCCTGAACAAGACCGCCGAGGACTTTGAGCTGCGTGACGTGCTCAGCCACAGCGAGC
CCAATGACGTGGTGCGCAGCCTGATCCACCTGGGCCTGACCCGGGGCGCTCCGGACAACATCACCGCCATCGTGATCAAG
GCCGCAGGACACTGA