Detailed information of component protein
Summary
![experimental experimental](images/experimental.png)
External database links
Locus tag (Gene) | PFL_RS30795 |
Coordinate (Strand) | 6896215..6897927 (-) |
NCBI ID | WP_011064243.1 |
RefSeq | NC_004129 |
Uniprot ID | Q4K3Q0_PSEF5 |
KEGG ID | pfl:PFL_6075 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
FGE-sulfatase | PF03781.18 | 1.7e-28 | 125..357 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-570 | MYKLISTVLAMTLAGAVWAEEPANKMDNPKPLPDDVSLPLPCDGEMVFRYVYVLAQGTLDDREVNLGYPFSEGESGYQQSFISGYRRDYINGQFTLKDLPGAWGKTIGPALPKSGAGVPLKPMLYFIGKYEVTARQYAQVMAQAQSLASGDPAPACEAPEGLQGRLPKVKLSRFEAERFAAVYSAWLMKNHRDLLPVSGRGSSSEDGGLGFVRLPTEVEWEYAARGGQAVSRQELEGRLFPRRVEGSEDDGPLADWAVFNQVAGGTGQAARLMPIGTKLPNPIGMFDVIGNAAEMVQESFQLVHAGRRQGTYGGFVVKGGNYLEGEGTLFTGMRREYPLFGADGTEQSNETTGFRVAIGALSAPRSRYKELFAQWQKEGRLASLTDAIDDAQDPTKRLDAIIAASVDPRLQAELGLVNEELKRNVSLIAQQREEAAGNLIQSSALVAETINNYNIRLTNLKKSQQQAIDAKDEPSAKLFAEAIDNGRSALDGAVAIYIDNLATGTRYTDAVIQAQFQRIKEELNRKPVLGKSLVTRATLFVRHVGNYRQQRRADPATILKELLASTGQKS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
SP(Sec/SPI) | 0.9981 | pos: 19-20. VWA-EE. | MYKLISTVLAMTLAGAVWA |
Protein sequence: 571 a.a.
>T6CP012430 NC_004129:c6897927-6896215 [Pseudomonas protegens Pf-5] [TagR]
MYKLISTVLAMTLAGAVWAEEPANKMDNPKPLPDDVSLPLPCDGEMVFRYVYVLAQGTLDDREVNLGYPFSEGESGYQQS
FISGYRRDYINGQFTLKDLPGAWGKTIGPALPKSGAGVPLKPMLYFIGKYEVTARQYAQVMAQAQSLASGDPAPACEAPE
GLQGRLPKVKLSRFEAERFAAVYSAWLMKNHRDLLPVSGRGSSSEDGGLGFVRLPTEVEWEYAARGGQAVSRQELEGRLF
PRRVEGSEDDGPLADWAVFNQVAGGTGQAARLMPIGTKLPNPIGMFDVIGNAAEMVQESFQLVHAGRRQGTYGGFVVKGG
NYLEGEGTLFTGMRREYPLFGADGTEQSNETTGFRVAIGALSAPRSRYKELFAQWQKEGRLASLTDAIDDAQDPTKRLDA
IIAASVDPRLQAELGLVNEELKRNVSLIAQQREEAAGNLIQSSALVAETINNYNIRLTNLKKSQQQAIDAKDEPSAKLFA
EAIDNGRSALDGAVAIYIDNLATGTRYTDAVIQAQFQRIKEELNRKPVLGKSLVTRATLFVRHVGNYRQQRRADPATILK
ELLASTGQKS*
MYKLISTVLAMTLAGAVWAEEPANKMDNPKPLPDDVSLPLPCDGEMVFRYVYVLAQGTLDDREVNLGYPFSEGESGYQQS
FISGYRRDYINGQFTLKDLPGAWGKTIGPALPKSGAGVPLKPMLYFIGKYEVTARQYAQVMAQAQSLASGDPAPACEAPE
GLQGRLPKVKLSRFEAERFAAVYSAWLMKNHRDLLPVSGRGSSSEDGGLGFVRLPTEVEWEYAARGGQAVSRQELEGRLF
PRRVEGSEDDGPLADWAVFNQVAGGTGQAARLMPIGTKLPNPIGMFDVIGNAAEMVQESFQLVHAGRRQGTYGGFVVKGG
NYLEGEGTLFTGMRREYPLFGADGTEQSNETTGFRVAIGALSAPRSRYKELFAQWQKEGRLASLTDAIDDAQDPTKRLDA
IIAASVDPRLQAELGLVNEELKRNVSLIAQQREEAAGNLIQSSALVAETINNYNIRLTNLKKSQQQAIDAKDEPSAKLFA
EAIDNGRSALDGAVAIYIDNLATGTRYTDAVIQAQFQRIKEELNRKPVLGKSLVTRATLFVRHVGNYRQQRRADPATILK
ELLASTGQKS*
Nucleotide sequence: 1713 bp
>T6CP012430 NC_004129:c6897927-6896215 [Pseudomonas protegens Pf-5] [TagR]
ATGTATAAGTTGATCAGCACCGTGCTGGCCATGACCCTGGCCGGGGCCGTGTGGGCCGAAGAACCGGCGAACAAGATGGA
CAACCCCAAGCCGTTGCCGGACGACGTCAGCCTGCCGCTGCCCTGCGACGGCGAGATGGTGTTCCGCTACGTCTACGTGC
TGGCCCAGGGCACCCTGGACGACCGTGAGGTGAACCTCGGCTACCCCTTCAGCGAGGGCGAGAGCGGTTACCAGCAGTCG
TTCATTTCCGGCTATCGCCGGGACTACATCAACGGCCAGTTCACCCTCAAGGACCTGCCTGGCGCCTGGGGCAAGACCAT
TGGCCCGGCGCTGCCGAAAAGTGGCGCCGGGGTGCCCCTCAAGCCAATGCTGTATTTCATCGGCAAGTACGAGGTCACTG
CCCGCCAGTACGCCCAGGTCATGGCCCAGGCCCAGTCCCTGGCCAGCGGTGATCCGGCCCCGGCCTGTGAGGCGCCGGAG
GGCCTGCAGGGGCGCCTGCCCAAGGTCAAGCTGTCGCGCTTCGAGGCCGAGCGCTTTGCCGCGGTGTACAGCGCCTGGCT
GATGAAGAACCACCGCGACCTGCTGCCGGTCAGCGGCCGTGGCAGTTCCTCGGAAGACGGTGGCCTGGGCTTTGTGCGCC
TGCCCACCGAGGTGGAGTGGGAATACGCCGCCCGCGGTGGCCAGGCGGTCAGCCGCCAGGAGCTGGAAGGCCGCCTGTTC
CCGCGGCGCGTGGAGGGCAGCGAAGACGACGGCCCGCTGGCGGACTGGGCGGTATTCAACCAGGTGGCCGGCGGCACCGG
CCAGGCCGCGCGCCTGATGCCCATCGGCACCAAGCTGCCCAACCCCATCGGCATGTTCGACGTGATCGGCAACGCCGCCG
AGATGGTCCAGGAGTCCTTCCAGCTGGTGCACGCCGGGCGCCGCCAGGGCACCTACGGCGGTTTCGTGGTCAAGGGCGGC
AACTACCTGGAAGGCGAAGGCACGCTGTTCACCGGGATGCGCCGCGAGTACCCGCTGTTTGGCGCCGACGGCACTGAGCA
GAGCAACGAAACCACCGGTTTCCGGGTGGCCATCGGCGCGCTGTCGGCGCCCCGTTCGCGCTACAAGGAGCTGTTCGCCC
AGTGGCAGAAGGAAGGCCGCCTGGCGTCCCTGACCGATGCCATCGACGACGCCCAGGACCCCACCAAGCGCCTGGACGCC
ATCATCGCCGCCAGCGTCGACCCGCGCCTGCAGGCGGAGCTGGGGCTGGTCAACGAAGAGCTCAAGCGCAACGTCTCGCT
GATCGCCCAGCAGCGCGAGGAGGCGGCCGGCAACCTGATCCAGTCGTCGGCCCTGGTGGCCGAGACCATCAACAACTACA
ACATCCGCCTGACCAACCTGAAGAAGAGCCAGCAGCAGGCCATCGATGCCAAGGACGAGCCCAGCGCCAAGCTGTTCGCC
GAAGCCATCGACAACGGCCGCAGCGCGCTGGACGGGGCGGTGGCGATCTACATCGACAACCTGGCCACGGGGACCCGTTA
CACCGACGCGGTGATCCAGGCGCAATTTCAACGAATCAAGGAAGAGCTCAATCGCAAGCCGGTGCTCGGCAAGAGCCTGG
TGACGCGCGCTACGTTATTCGTTCGCCATGTCGGGAATTATCGCCAGCAACGGCGAGCCGACCCGGCGACGATTTTGAAG
GAACTGCTCGCATCGACCGGTCAGAAGTCATGA
ATGTATAAGTTGATCAGCACCGTGCTGGCCATGACCCTGGCCGGGGCCGTGTGGGCCGAAGAACCGGCGAACAAGATGGA
CAACCCCAAGCCGTTGCCGGACGACGTCAGCCTGCCGCTGCCCTGCGACGGCGAGATGGTGTTCCGCTACGTCTACGTGC
TGGCCCAGGGCACCCTGGACGACCGTGAGGTGAACCTCGGCTACCCCTTCAGCGAGGGCGAGAGCGGTTACCAGCAGTCG
TTCATTTCCGGCTATCGCCGGGACTACATCAACGGCCAGTTCACCCTCAAGGACCTGCCTGGCGCCTGGGGCAAGACCAT
TGGCCCGGCGCTGCCGAAAAGTGGCGCCGGGGTGCCCCTCAAGCCAATGCTGTATTTCATCGGCAAGTACGAGGTCACTG
CCCGCCAGTACGCCCAGGTCATGGCCCAGGCCCAGTCCCTGGCCAGCGGTGATCCGGCCCCGGCCTGTGAGGCGCCGGAG
GGCCTGCAGGGGCGCCTGCCCAAGGTCAAGCTGTCGCGCTTCGAGGCCGAGCGCTTTGCCGCGGTGTACAGCGCCTGGCT
GATGAAGAACCACCGCGACCTGCTGCCGGTCAGCGGCCGTGGCAGTTCCTCGGAAGACGGTGGCCTGGGCTTTGTGCGCC
TGCCCACCGAGGTGGAGTGGGAATACGCCGCCCGCGGTGGCCAGGCGGTCAGCCGCCAGGAGCTGGAAGGCCGCCTGTTC
CCGCGGCGCGTGGAGGGCAGCGAAGACGACGGCCCGCTGGCGGACTGGGCGGTATTCAACCAGGTGGCCGGCGGCACCGG
CCAGGCCGCGCGCCTGATGCCCATCGGCACCAAGCTGCCCAACCCCATCGGCATGTTCGACGTGATCGGCAACGCCGCCG
AGATGGTCCAGGAGTCCTTCCAGCTGGTGCACGCCGGGCGCCGCCAGGGCACCTACGGCGGTTTCGTGGTCAAGGGCGGC
AACTACCTGGAAGGCGAAGGCACGCTGTTCACCGGGATGCGCCGCGAGTACCCGCTGTTTGGCGCCGACGGCACTGAGCA
GAGCAACGAAACCACCGGTTTCCGGGTGGCCATCGGCGCGCTGTCGGCGCCCCGTTCGCGCTACAAGGAGCTGTTCGCCC
AGTGGCAGAAGGAAGGCCGCCTGGCGTCCCTGACCGATGCCATCGACGACGCCCAGGACCCCACCAAGCGCCTGGACGCC
ATCATCGCCGCCAGCGTCGACCCGCGCCTGCAGGCGGAGCTGGGGCTGGTCAACGAAGAGCTCAAGCGCAACGTCTCGCT
GATCGCCCAGCAGCGCGAGGAGGCGGCCGGCAACCTGATCCAGTCGTCGGCCCTGGTGGCCGAGACCATCAACAACTACA
ACATCCGCCTGACCAACCTGAAGAAGAGCCAGCAGCAGGCCATCGATGCCAAGGACGAGCCCAGCGCCAAGCTGTTCGCC
GAAGCCATCGACAACGGCCGCAGCGCGCTGGACGGGGCGGTGGCGATCTACATCGACAACCTGGCCACGGGGACCCGTTA
CACCGACGCGGTGATCCAGGCGCAATTTCAACGAATCAAGGAAGAGCTCAATCGCAAGCCGGTGCTCGGCAAGAGCCTGG
TGACGCGCGCTACGTTATTCGTTCGCCATGTCGGGAATTATCGCCAGCAACGGCGAGCCGACCCGGCGACGATTTTGAAG
GAACTGCTCGCATCGACCGGTCAGAAGTCATGA