Detailed information of component protein


Summary

Component ID T6CP011403
Component protein type PAAR
T6SS ID (Type) T6SS00015 experimental (Type i1)
Strain Pseudomonas putida KT2440
Replicon chromosome
Sequence Protein sequence (1531 a.a.); Nucleotide sequence (4593 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PP_RS21210
Coordinate (Strand) 4613630..4618222 (+)
NCBI ID WP_010954874.1
RefSeq NC_002947
Uniprot ID Q88FK6_PSEPK
KEGG ID ppu:PP_4085
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Tox-SHH PF15652.8 7.8e-37 1424..1525
DUF6531 PF20148.1 8.1e-17 289..369
RHS PF03527.16 7.9e-15 1301..1338
PAAR_motif PF05488.15 7.7e-11 192..235
RHS_repeat PF05593.16 1.6e-08 818..852
RHS_repeat PF05593.16 3.8e-08 692..725
RHS_repeat PF05593.16 1.2e-07 965..1000
RHS_repeat PF05593.16 2.9e-07 755..791
RHS_repeat PF05593.16 8.3e-06 631..664
RHS_repeat PF05593.16 1.4e-05 921..950
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-30 MAQTVHAARMGDAILHPSLAAEMISAVAEA
Transmembrane helix 31-53 VIYAAATAAVAAAISLAVVGTVA
Outside 54-56 TGG
Transmembrane helix 57-79 AAGVAIAAVAGVAVGAVSTLSVG
Inside 80-148 EDQTVGDAISSFCDSLGNSVDSPDPYGKIESGSTNVLINSEPAARAAGITGPPGGGAADTEQEEPSILE
Transmembrane helix 149-171 NVGSMAMAAVPYLVPFVGLGMAI
Outside 172-1530 RDIFNPPVTTPANPGSEPAEGDKISCSRHPPLPDTFIAQGSDKVFINGQPAARSGDKTTCDATIDVNENVSPNVRIGGGTATVRDIRNGKSKIAMFTGIIAGMLISRRFGRIKGCTLGNPVAVATGSKLQEGPEDIDFNLPGLLAIQWARRYDSRDMRSDGLLGMGWSVPYEVELARVPHPQGGTLWIYIDNDGNRLELGRLSAGDAFISAVDGLAFFQLEDGQTVVEDINEGLYRVFDTDPLNPKRSRLIRLGDRNLNCLDLLYDEQGRLKALYDKYGQTVVQLHYAARHPQRVSEVSRVFLKNGGTPTVERSELLVSYRYTDNGQLHEVLDATDQRVRRFTYTPEGYLNSHQLASGAVREYEWARFAIPETRPTPKRLDGTPYRLPPLLEPQPDHEWRVIRHWGSDGEEYRFEYNLEAGETLVTDNLGRRDHYYWGPLYEVYKHIDPQGNCWLAEVIAGQLIKRIDPQGGEWRYSYDDIGRLIETRDPLGRSEHIKYLRHWALPIQVTDTAGRTRQYGYDSHGNLLWQQDPLGRETQYQYDPEGRVTQVTDALEKSKYLSWNTCGQLLSYRDCSNAQTLYHYDAHGRLRESINARGEHTHFRYDARGYLVESERPDGRIDRYEIDVAGQLTRYIDPAQKTLQFRYDPSGRLVERTDAMGYSVKFRYDAYGRLLQLTNENDESYRFGWDELDRLVAQKDLDGSGRLYAYNVLDEVIRLTHVPSPDEQPPLSDNAPPTRTTAIRHDFERDAIGRLVSKRTEDGTTDYRYDAADNLLSITFTDNKGEKQQLDYTYDANGQLLSETNSAGLLQYRYDELGNLQTLVLPDQRELNHLYYGSGHLHQINLNGRVISDFERDAVHDEVLRTQGKLVTRTRYDTSGRLAGKAIHYRDAPAEVLPLLDKAYRYDASDNLIAEVLTQTQRRGMSNAANDENANLEQIIGRFLDLPHTGKTYSGHNRYGYDLNEQLQTVHQSRPNWQATQVEDFKYDKAGNLFDGPKLNGLIKHNRVLVYQDKRYRYDRFGRLCEKRIGSNWVQYFEYDAEQRLVCVEQYRSGERERVVFAYDPLGRRISKEVYQRDYPEPRRRVLFHWQGFRLLQEVQSGLASLYVYATVESYDPLARVDGKPGSEAIHYFHTTLVGQPEQLTDSDGNTIWRSDHHGWGKIINEWHSQQNGREQNLRNQGQYIDRETGLHFNIFRFYDPDIGRFTTTDPLGIEGGVNLYSYAPNIVNYSDPLGLCPENVKEYDITPYRPSNSPLENHHGILDIWAAQNVPSYGGKYPKGSPTIVLSSKNHAATKAVYREWLREKTGKPVGGKVDWSQISNREVMQLSERMFDVAGVPATSRTSYYRALNRYLHTGTF


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9198 - -


  Protein sequence: 1531 a.a.    

>T6CP011403 NC_002947:4613630-4618222 [Pseudomonas putida KT2440] [PAAR]
MAQTVHAARMGDAILHPSLAAEMISAVAEAVIYAAATAAVAAAISLAVVGTVATGGAAGVAIAAVAGVAVGAVSTLSVGE
DQTVGDAISSFCDSLGNSVDSPDPYGKIESGSTNVLINSEPAARAAGITGPPGGGAADTEQEEPSILENVGSMAMAAVPY
LVPFVGLGMAIRDIFNPPVTTPANPGSEPAEGDKISCSRHPPLPDTFIAQGSDKVFINGQPAARSGDKTTCDATIDVNEN
VSPNVRIGGGTATVRDIRNGKSKIAMFTGIIAGMLISRRFGRIKGCTLGNPVAVATGSKLQEGPEDIDFNLPGLLAIQWA
RRYDSRDMRSDGLLGMGWSVPYEVELARVPHPQGGTLWIYIDNDGNRLELGRLSAGDAFISAVDGLAFFQLEDGQTVVED
INEGLYRVFDTDPLNPKRSRLIRLGDRNLNCLDLLYDEQGRLKALYDKYGQTVVQLHYAARHPQRVSEVSRVFLKNGGTP
TVERSELLVSYRYTDNGQLHEVLDATDQRVRRFTYTPEGYLNSHQLASGAVREYEWARFAIPETRPTPKRLDGTPYRLPP
LLEPQPDHEWRVIRHWGSDGEEYRFEYNLEAGETLVTDNLGRRDHYYWGPLYEVYKHIDPQGNCWLAEVIAGQLIKRIDP
QGGEWRYSYDDIGRLIETRDPLGRSEHIKYLRHWALPIQVTDTAGRTRQYGYDSHGNLLWQQDPLGRETQYQYDPEGRVT
QVTDALEKSKYLSWNTCGQLLSYRDCSNAQTLYHYDAHGRLRESINARGEHTHFRYDARGYLVESERPDGRIDRYEIDVA
GQLTRYIDPAQKTLQFRYDPSGRLVERTDAMGYSVKFRYDAYGRLLQLTNENDESYRFGWDELDRLVAQKDLDGSGRLYA
YNVLDEVIRLTHVPSPDEQPPLSDNAPPTRTTAIRHDFERDAIGRLVSKRTEDGTTDYRYDAADNLLSITFTDNKGEKQQ
LDYTYDANGQLLSETNSAGLLQYRYDELGNLQTLVLPDQRELNHLYYGSGHLHQINLNGRVISDFERDAVHDEVLRTQGK
LVTRTRYDTSGRLAGKAIHYRDAPAEVLPLLDKAYRYDASDNLIAEVLTQTQRRGMSNAANDENANLEQIIGRFLDLPHT
GKTYSGHNRYGYDLNEQLQTVHQSRPNWQATQVEDFKYDKAGNLFDGPKLNGLIKHNRVLVYQDKRYRYDRFGRLCEKRI
GSNWVQYFEYDAEQRLVCVEQYRSGERERVVFAYDPLGRRISKEVYQRDYPEPRRRVLFHWQGFRLLQEVQSGLASLYVY
ATVESYDPLARVDGKPGSEAIHYFHTTLVGQPEQLTDSDGNTIWRSDHHGWGKIINEWHSQQNGREQNLRNQGQYIDRET
GLHFNIFRFYDPDIGRFTTTDPLGIEGGVNLYSYAPNIVNYSDPLGLCPENVKEYDITPYRPSNSPLENHHGILDIWAAQ
NVPSYGGKYPKGSPTIVLSSKNHAATKAVYREWLREKTGKPVGGKVDWSQISNREVMQLSERMFDVAGVPATSRTSYYRA
LNRYLHTGTF*

  Nucleotide sequence: 4593 bp    

>T6CP011403 NC_002947:4613630-4618222 [Pseudomonas putida KT2440] [PAAR]
ATGGCGCAGACCGTTCACGCCGCCCGAATGGGCGACGCAATTCTTCATCCATCGCTTGCCGCTGAAATGATCAGCGCAGT
TGCCGAGGCCGTTATCTATGCAGCGGCCACCGCGGCCGTCGCCGCAGCCATCAGCTTGGCCGTGGTTGGCACCGTAGCCA
CTGGCGGTGCGGCTGGCGTCGCCATCGCCGCAGTCGCGGGTGTGGCAGTCGGAGCAGTGAGCACCCTTTCCGTCGGCGAA
GACCAGACTGTCGGCGACGCCATCTCCAGCTTTTGCGACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAA
AATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAG
GCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTAT
CTCGTCCCGTTCGTGGGGCTGGGGATGGCCATACGTGACATCTTCAACCCGCCCGTGACCACACCGGCCAACCCAGGCTC
GGAGCCCGCTGAAGGAGACAAGATCAGCTGTTCGCGCCACCCGCCCCTGCCCGACACCTTCATTGCGCAAGGCTCGGACA
AGGTATTCATCAATGGCCAACCCGCAGCGCGTTCAGGTGACAAGACCACCTGCGATGCCACGATTGATGTGAATGAAAAC
GTATCGCCCAATGTGCGCATTGGTGGCGGTACGGCGACGGTCCGGGACATTCGCAACGGCAAGAGCAAGATTGCGATGTT
TACCGGGATTATTGCGGGGATGCTTATCTCCCGAAGGTTTGGCCGCATCAAAGGGTGCACATTAGGCAACCCGGTTGCTG
TTGCCACCGGGAGCAAGCTGCAGGAGGGTCCGGAGGACATCGACTTCAATCTCCCAGGCTTGCTGGCCATCCAATGGGCA
CGGCGCTACGACAGCAGGGACATGCGCAGCGACGGTCTACTGGGGATGGGTTGGAGTGTCCCCTATGAAGTGGAGCTGGC
CCGCGTCCCACATCCTCAAGGCGGTACGCTGTGGATCTACATCGACAACGACGGTAACCGACTGGAACTGGGCCGCCTCA
GTGCCGGTGATGCCTTCATCAGTGCCGTGGACGGCTTGGCCTTCTTCCAGCTGGAGGACGGCCAGACCGTTGTCGAAGAT
ATCAATGAAGGGCTTTATCGGGTCTTCGATACCGACCCGCTGAATCCGAAACGCTCACGGCTGATCAGGCTCGGCGACCG
CAATCTCAATTGCCTCGACCTGCTGTACGACGAACAAGGGCGCCTGAAAGCCCTCTATGACAAGTACGGCCAAACGGTCG
TGCAGCTTCACTATGCCGCCAGGCATCCCCAGCGTGTCAGTGAGGTATCACGGGTGTTCCTGAAAAACGGTGGAACACCT
ACGGTAGAACGCAGCGAACTGCTGGTCAGCTATCGCTACACCGACAACGGGCAACTGCATGAGGTATTGGATGCGACGGA
TCAACGAGTCCGCCGCTTCACTTACACCCCCGAGGGCTATCTCAATAGCCATCAACTGGCTAGCGGTGCTGTCCGCGAAT
ACGAATGGGCGCGCTTCGCCATTCCTGAAACGCGCCCTACTCCCAAGCGCCTGGACGGCACGCCCTACCGCTTGCCTCCA
CTGCTGGAGCCCCAACCCGATCACGAATGGCGAGTGATTCGCCACTGGGGCAGCGATGGTGAAGAGTACCGGTTCGAGTA
CAACCTGGAAGCCGGTGAAACCCTCGTCACGGACAACCTCGGCCGCCGTGATCACTACTACTGGGGGCCACTGTACGAGG
TCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCG
CAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACA
CATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACA
GCCACGGCAATCTGCTCTGGCAGCAGGACCCGCTGGGGCGCGAGACACAGTACCAATACGACCCGGAAGGCCGTGTTACC
CAGGTCACCGATGCCCTCGAAAAGAGCAAGTACCTGAGCTGGAACACGTGCGGTCAGTTGCTCAGCTACCGCGACTGCAG
CAATGCCCAGACGCTGTATCACTACGACGCCCATGGCCGCTTGCGCGAAAGCATCAATGCCCGGGGTGAACACACCCACT
TCCGCTACGACGCACGTGGTTATCTGGTCGAAAGCGAACGCCCGGACGGTCGCATTGATCGTTATGAAATTGATGTCGCT
GGTCAACTGACGCGCTATATCGACCCTGCCCAGAAAACCCTGCAATTTCGCTACGACCCCAGCGGCCGGCTGGTCGAACG
CACGGACGCCATGGGCTACAGCGTGAAATTCCGCTACGACGCCTATGGTCGGCTACTGCAACTTACCAACGAGAATGACG
AGTCATACCGCTTCGGCTGGGACGAACTGGACCGGCTGGTGGCACAAAAAGACCTGGATGGCAGTGGCCGCCTCTATGCC
TACAACGTGCTGGATGAGGTCATTCGTCTTACCCATGTGCCCTCGCCTGACGAGCAGCCGCCCCTGTCCGACAACGCCCC
GCCGACACGGACGACTGCCATCCGCCATGACTTCGAGCGGGACGCCATCGGCCGGCTTGTCAGCAAGCGCACCGAAGATG
GCACCACCGACTACCGCTACGACGCGGCCGACAATCTGCTGTCCATCACCTTCACAGACAATAAAGGAGAAAAACAGCAA
CTCGACTACACCTACGACGCCAACGGGCAACTGCTCAGCGAAACCAACAGCGCTGGCTTGCTGCAGTACCGCTACGACGA
ACTGGGTAACCTGCAGACGCTAGTCCTGCCCGACCAACGCGAACTCAACCACCTGTACTACGGCAGCGGGCACCTGCACC
AGATCAACCTGAACGGCCGGGTGATCAGCGATTTCGAGCGTGATGCGGTGCACGACGAGGTCCTGCGGACCCAAGGCAAA
CTGGTCACCCGCACGCGCTACGACACCAGCGGTCGCTTGGCCGGCAAGGCTATTCACTACCGCGATGCCCCTGCTGAAGT
GCTGCCGCTGCTGGACAAGGCCTATCGCTACGATGCCAGCGACAACCTGATTGCCGAGGTACTGACCCAGACACAGCGCC
GAGGGATGTCCAACGCTGCCAATGACGAAAACGCTAACCTCGAACAGATCATCGGTCGCTTCCTTGACCTACCCCACACG
GGCAAGACCTATTCGGGACACAACCGCTACGGCTACGACCTCAACGAGCAACTGCAGACCGTTCACCAGTCACGCCCCAA
CTGGCAGGCCACGCAGGTCGAGGATTTCAAGTACGACAAGGCCGGCAACCTGTTCGACGGCCCCAAACTCAATGGCCTGA
TCAAGCACAACCGGGTGTTGGTGTATCAGGACAAGCGCTATCGCTATGACCGCTTTGGGCGGCTGTGCGAGAAGCGGATC
GGCAGCAATTGGGTGCAGTATTTCGAGTATGACGCCGAGCAGCGGCTGGTTTGCGTGGAGCAGTACCGCAGTGGCGAGCG
TGAGCGGGTGGTGTTTGCCTATGACCCGTTGGGGAGGCGGATCAGCAAGGAGGTTTATCAGAGGGACTATCCAGAGCCGC
GTCGGCGGGTGCTGTTTCACTGGCAAGGGTTTCGCTTGCTTCAAGAAGTGCAGAGTGGTTTGGCTAGCTTGTATGTGTAT
GCCACTGTGGAGAGCTATGACCCGTTGGCGCGGGTTGACGGTAAACCTGGCAGCGAAGCAATTCACTATTTTCATACCAC
CTTGGTTGGGCAACCGGAGCAGCTGACTGATTCTGATGGCAACACGATCTGGCGTAGTGACCATCACGGTTGGGGAAAGA
TAATTAATGAGTGGCACAGCCAACAAAATGGACGTGAACAAAACCTGCGAAATCAAGGCCAATACATTGATCGCGAGACT
GGGCTACACTTCAATATATTCAGATTTTACGACCCCGATATAGGCCGCTTCACAACAACAGACCCTCTCGGGATCGAAGG
AGGAGTCAATCTCTACAGCTACGCCCCAAATATAGTAAACTACTCAGATCCGCTTGGGCTCTGCCCCGAAAATGTCAAAG
AATATGATATCACCCCATACAGGCCTAGCAATAGCCCCCTCGAAAACCATCATGGCATCCTAGATATCTGGGCGGCACAA
AACGTGCCCTCATATGGAGGAAAATATCCCAAAGGGTCTCCTACGATCGTATTGTCTAGTAAAAATCATGCAGCCACCAA
GGCGGTGTATCGTGAGTGGCTAAGAGAAAAAACTGGAAAACCTGTGGGAGGCAAAGTAGATTGGTCGCAAATCAGCAATC
GAGAGGTCATGCAACTTTCGGAGCGAATGTTTGACGTCGCAGGAGTTCCAGCCACCAGCCGAACCTCCTACTACAGGGCA
TTGAATAGATATTTACACACAGGCACTTTCTGA