Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PSF113_RS42645 |
Coordinate (Strand) | 2825623..2826705 (+) |
NCBI ID | WP_014337912.1 |
RefSeq | NC_016830 |
Uniprot ID | G8QBI4_PSEF3 |
KEGG ID | pfe:PSF113_2422 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
ImpA_N | PF06812.14 | 1e-34 | 16..138 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-360 | VSLPISPLPELVSQLLEPISAESPCGPDLRYEPEYDQLRELRREDDTSLPTGVWQSSVKRALWPDLERLATTLLLERSKDLMISAWLGEAWLHMAGLEGLPGSLALVAGLCERYPEQLHPQAEEGDQSWRVIPLEWLARRYSEVLLTRVPLFDGREQAFAAFCLDDWQRLQRQQVLVNDSKNAKASAEAARSDQKKLSELIRNTPLSFWLHRQGSLMLSLQHLQRLEAWSDAYLGNLAPGYKSLQDVMQALLALVEEFIAMHPQQPTVAPVQTSPATTTSTPQPQAAPAQVFQEPANREEAYRQLLVIAGYLARTEPHSPVPYLIRRGVEWGNKPLSELLGELISADAESRRLWTLLGVL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9145 | - | - |
Protein sequence: 361 a.a.
>T6CP005726 NC_016830:2825623-2826705 [Pseudomonas fluorescens F113] [TssA]
VSLPISPLPELVSQLLEPISAESPCGPDLRYEPEYDQLRELRREDDTSLPTGVWQSSVKRALWPDLERLATTLLLERSKD
LMISAWLGEAWLHMAGLEGLPGSLALVAGLCERYPEQLHPQAEEGDQSWRVIPLEWLARRYSEVLLTRVPLFDGREQAFA
AFCLDDWQRLQRQQVLVNDSKNAKASAEAARSDQKKLSELIRNTPLSFWLHRQGSLMLSLQHLQRLEAWSDAYLGNLAPG
YKSLQDVMQALLALVEEFIAMHPQQPTVAPVQTSPATTTSTPQPQAAPAQVFQEPANREEAYRQLLVIAGYLARTEPHSP
VPYLIRRGVEWGNKPLSELLGELISADAESRRLWTLLGVL*
VSLPISPLPELVSQLLEPISAESPCGPDLRYEPEYDQLRELRREDDTSLPTGVWQSSVKRALWPDLERLATTLLLERSKD
LMISAWLGEAWLHMAGLEGLPGSLALVAGLCERYPEQLHPQAEEGDQSWRVIPLEWLARRYSEVLLTRVPLFDGREQAFA
AFCLDDWQRLQRQQVLVNDSKNAKASAEAARSDQKKLSELIRNTPLSFWLHRQGSLMLSLQHLQRLEAWSDAYLGNLAPG
YKSLQDVMQALLALVEEFIAMHPQQPTVAPVQTSPATTTSTPQPQAAPAQVFQEPANREEAYRQLLVIAGYLARTEPHSP
VPYLIRRGVEWGNKPLSELLGELISADAESRRLWTLLGVL*
Nucleotide sequence: 1083 bp
>T6CP005726 NC_016830:2825623-2826705 [Pseudomonas fluorescens F113] [TssA]
GTGAGCTTGCCGATATCGCCTTTGCCTGAGCTGGTCAGCCAATTGCTCGAGCCGATCAGCGCCGAATCGCCCTGTGGCCC
GGACCTGCGCTACGAACCGGAATATGACCAGTTGCGCGAATTGCGCCGGGAGGACGACACCAGCCTGCCCACTGGTGTGT
GGCAGTCTTCTGTCAAGCGCGCCCTGTGGCCAGACCTGGAACGGCTCGCGACCACGTTGCTGCTTGAGCGCAGCAAGGAC
CTGATGATCAGCGCCTGGCTGGGGGAGGCCTGGCTGCATATGGCCGGGCTGGAAGGGTTGCCGGGCAGTCTGGCGTTGGT
GGCAGGGCTGTGTGAGCGCTATCCGGAGCAGTTGCACCCCCAGGCCGAGGAAGGCGACCAGTCATGGCGGGTGATCCCCC
TGGAGTGGTTGGCCCGTCGCTACAGCGAAGTGCTGCTGACGCGGGTGCCGTTGTTCGACGGCCGGGAACAGGCCTTCGCC
GCTTTCTGCCTGGACGACTGGCAACGCTTGCAGCGCCAGCAAGTGTTGGTCAACGACAGCAAGAACGCCAAGGCCTCGGC
CGAAGCGGCGCGCAGCGATCAAAAGAAGCTCAGCGAACTGATTCGCAACACACCCTTGTCGTTCTGGTTGCATCGCCAGG
GCAGTCTGATGTTGAGTCTGCAACACCTGCAACGGCTCGAAGCTTGGAGCGACGCTTACCTGGGCAACCTGGCCCCGGGC
TACAAATCCCTGCAGGACGTGATGCAGGCCTTGCTGGCACTGGTAGAGGAGTTCATCGCGATGCACCCACAGCAACCCAC
CGTCGCGCCGGTGCAAACGTCCCCGGCGACCACGACGTCGACGCCCCAGCCGCAGGCAGCACCTGCCCAGGTCTTCCAGG
AACCGGCCAATCGTGAAGAGGCCTACCGACAGCTACTGGTCATCGCCGGTTACCTGGCCCGTACCGAACCCCACAGCCCG
GTGCCCTACCTGATCCGGCGCGGTGTGGAGTGGGGCAACAAGCCGTTGAGCGAGTTGTTGGGTGAGCTGATCAGTGCCGA
TGCCGAATCCCGGCGCTTGTGGACGTTATTGGGCGTTCTCTAA
GTGAGCTTGCCGATATCGCCTTTGCCTGAGCTGGTCAGCCAATTGCTCGAGCCGATCAGCGCCGAATCGCCCTGTGGCCC
GGACCTGCGCTACGAACCGGAATATGACCAGTTGCGCGAATTGCGCCGGGAGGACGACACCAGCCTGCCCACTGGTGTGT
GGCAGTCTTCTGTCAAGCGCGCCCTGTGGCCAGACCTGGAACGGCTCGCGACCACGTTGCTGCTTGAGCGCAGCAAGGAC
CTGATGATCAGCGCCTGGCTGGGGGAGGCCTGGCTGCATATGGCCGGGCTGGAAGGGTTGCCGGGCAGTCTGGCGTTGGT
GGCAGGGCTGTGTGAGCGCTATCCGGAGCAGTTGCACCCCCAGGCCGAGGAAGGCGACCAGTCATGGCGGGTGATCCCCC
TGGAGTGGTTGGCCCGTCGCTACAGCGAAGTGCTGCTGACGCGGGTGCCGTTGTTCGACGGCCGGGAACAGGCCTTCGCC
GCTTTCTGCCTGGACGACTGGCAACGCTTGCAGCGCCAGCAAGTGTTGGTCAACGACAGCAAGAACGCCAAGGCCTCGGC
CGAAGCGGCGCGCAGCGATCAAAAGAAGCTCAGCGAACTGATTCGCAACACACCCTTGTCGTTCTGGTTGCATCGCCAGG
GCAGTCTGATGTTGAGTCTGCAACACCTGCAACGGCTCGAAGCTTGGAGCGACGCTTACCTGGGCAACCTGGCCCCGGGC
TACAAATCCCTGCAGGACGTGATGCAGGCCTTGCTGGCACTGGTAGAGGAGTTCATCGCGATGCACCCACAGCAACCCAC
CGTCGCGCCGGTGCAAACGTCCCCGGCGACCACGACGTCGACGCCCCAGCCGCAGGCAGCACCTGCCCAGGTCTTCCAGG
AACCGGCCAATCGTGAAGAGGCCTACCGACAGCTACTGGTCATCGCCGGTTACCTGGCCCGTACCGAACCCCACAGCCCG
GTGCCCTACCTGATCCGGCGCGGTGTGGAGTGGGGCAACAAGCCGTTGAGCGAGTTGTTGGGTGAGCTGATCAGTGCCGA
TGCCGAATCCCGGCGCTTGTGGACGTTATTGGGCGTTCTCTAA