Detailed information of component protein


Summary

Component ID T6CP002900
Component protein type TssI
T6SS ID (Type) T6SS00287 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (752 a.a.); Nucleotide sequence (2256 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS26730
Coordinate (Strand) 3877294..3879549 (+)
NCBI ID WP_012445678.1
RefSeq NC_010717
Uniprot ID UPI000174DE96
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-751 MTSMLISYPILPANAANQSDQAKFDAMVALTQPTRGLYPITTGNRWHGGIHLTPGTEPIRAIADGVIVAYRLAPATKDYPGQGLYDTSFVLIKHDTHSGENTQVVYYSLYMHLAPKGSLTDAQRSQMMPFLRNAATGESATQAPANTRVWRKEVLGFGGQLYGVPTVHFEIFTTEADLARFWRDASAVAAGGHGSNDVFGDTHFILPANLNFVARHPHAVAPHRIDVPGHNQFYELPIGIAGQSTERLHVVVELSKGHRIATTYRLDAQGKLAGQIGLPLRQDDYEYEIFRLATKLYADCPSAGYEYLRFGRILSSDTTTHTENWQLIRYAENAIGYINLADPGNNVIVLSDADFPDSWQKLSEGRAASPEDGIANVDGLTQLLNLPASPSEPSLSAAPSFLSRASDASVIKLLRHFICKHPSEWDTSDIDTRYAVLKQPGKPLNDPTAWKNFKDHVEAMAFWPQTGLADRSVWHFHPLTFINHYMKCGWLSVNEFARCLPRRSLSDRNLVWNTALTRATTHSIHYNKYIRKFCGNSRKRLAHNLAQSYIETGILSLMEEGGAGNGHPYTAFFGRGYHQLTWAGNYRGYGEFKNLPQHTGAYSDRRITRTSQHPLDSGGTLITWSPRYDPATISSDLDHAGESSGFFWASKSFRGKKNMNRVADLEFNESSVGFCCWLINGGGAGYSNRQQFAKFLANILLDEPLKSGQVNFTYPALSPPGNPALCTSFPPATVPYTERQIIDYEPQIPPV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
SP(Sec/SPI) 0.5070 pos: 15-16. ANA-AN. MTSMLISYPILPANA


  Protein sequence: 752 a.a.    

>T6CP002900 NC_010717:3877294-3879549 [Xanthomonas oryzae pv. oryzae PXO99A] [TssI]
MTSMLISYPILPANAANQSDQAKFDAMVALTQPTRGLYPITTGNRWHGGIHLTPGTEPIRAIADGVIVAYRLAPATKDYP
GQGLYDTSFVLIKHDTHSGENTQVVYYSLYMHLAPKGSLTDAQRSQMMPFLRNAATGESATQAPANTRVWRKEVLGFGGQ
LYGVPTVHFEIFTTEADLARFWRDASAVAAGGHGSNDVFGDTHFILPANLNFVARHPHAVAPHRIDVPGHNQFYELPIGI
AGQSTERLHVVVELSKGHRIATTYRLDAQGKLAGQIGLPLRQDDYEYEIFRLATKLYADCPSAGYEYLRFGRILSSDTTT
HTENWQLIRYAENAIGYINLADPGNNVIVLSDADFPDSWQKLSEGRAASPEDGIANVDGLTQLLNLPASPSEPSLSAAPS
FLSRASDASVIKLLRHFICKHPSEWDTSDIDTRYAVLKQPGKPLNDPTAWKNFKDHVEAMAFWPQTGLADRSVWHFHPLT
FINHYMKCGWLSVNEFARCLPRRSLSDRNLVWNTALTRATTHSIHYNKYIRKFCGNSRKRLAHNLAQSYIETGILSLMEE
GGAGNGHPYTAFFGRGYHQLTWAGNYRGYGEFKNLPQHTGAYSDRRITRTSQHPLDSGGTLITWSPRYDPATISSDLDHA
GESSGFFWASKSFRGKKNMNRVADLEFNESSVGFCCWLINGGGAGYSNRQQFAKFLANILLDEPLKSGQVNFTYPALSPP
GNPALCTSFPPATVPYTERQIIDYEPQIPPV*

  Nucleotide sequence: 2256 bp    

>T6CP002900 NC_010717:3877294-3879549 [Xanthomonas oryzae pv. oryzae PXO99A] [TssI]
ATGACATCAATGCTTATCAGCTATCCCATTTTGCCTGCCAACGCAGCCAATCAAAGCGACCAAGCAAAGTTCGATGCGAT
GGTGGCGCTTACACAACCGACCAGAGGACTCTACCCAATCACAACGGGAAACCGCTGGCACGGCGGCATCCACCTTACAC
CGGGAACCGAGCCCATACGTGCGATCGCTGATGGCGTCATCGTCGCCTATCGCCTGGCTCCGGCAACCAAAGACTATCCA
GGACAGGGCCTTTACGACACCAGTTTCGTGCTGATAAAGCACGATACGCATAGCGGTGAAAACACGCAGGTCGTGTACTA
CTCGCTATACATGCACCTCGCCCCGAAAGGCTCGCTTACCGACGCTCAGCGGTCACAGATGATGCCGTTCCTGCGAAATG
CGGCAACTGGCGAATCGGCCACGCAAGCACCTGCCAATACCCGGGTTTGGCGGAAGGAAGTACTCGGCTTCGGGGGCCAG
CTTTACGGCGTACCGACGGTGCACTTCGAAATATTCACCACGGAAGCAGACCTTGCGAGGTTCTGGCGGGACGCCAGCGC
TGTCGCTGCAGGTGGACATGGCTCCAATGATGTCTTCGGGGATACCCACTTCATCCTCCCGGCCAATCTCAACTTCGTAG
CACGCCATCCGCATGCCGTCGCTCCACACCGCATAGACGTACCCGGGCATAACCAATTCTACGAACTGCCCATTGGCATA
GCAGGCCAAAGCACTGAACGCCTACACGTGGTAGTAGAACTAAGCAAAGGACATCGCATTGCTACCACTTATCGCTTGGA
TGCTCAAGGAAAGCTCGCAGGGCAGATCGGTCTCCCCTTGAGGCAAGATGACTATGAGTACGAAATTTTCCGACTGGCAA
CGAAACTTTACGCGGATTGCCCAAGTGCAGGATATGAATACCTGCGCTTTGGTCGTATTTTGAGCAGCGACACAACAACG
CATACAGAAAACTGGCAATTGATCCGATATGCCGAAAACGCTATCGGCTACATCAACTTGGCTGATCCTGGGAATAACGT
CATTGTACTTTCGGACGCGGACTTTCCTGACTCTTGGCAAAAGCTATCCGAAGGCCGGGCAGCGAGCCCTGAGGATGGCA
TCGCAAACGTAGATGGCTTAACTCAACTTCTTAACTTACCTGCATCGCCATCTGAGCCATCCTTGTCGGCTGCACCAAGC
TTTCTGTCACGGGCTAGTGACGCCAGTGTTATTAAGCTGCTGCGGCATTTTATTTGCAAACATCCTAGTGAATGGGATAC
AAGCGATATCGACACCAGATATGCCGTGCTGAAGCAACCGGGTAAGCCACTTAACGATCCCACTGCTTGGAAGAACTTCA
AAGACCACGTTGAAGCGATGGCGTTTTGGCCTCAGACAGGCTTAGCAGACCGGAGCGTCTGGCATTTCCATCCTTTGACT
TTCATAAACCACTACATGAAATGTGGGTGGCTTAGCGTTAATGAGTTTGCTAGATGCTTACCAAGACGCAGCCTTTCAGA
TCGCAACTTAGTCTGGAATACGGCATTGACTAGGGCAACGACACATTCGATTCATTACAACAAATACATACGCAAGTTTT
GTGGCAACTCCAGAAAAAGGCTCGCTCACAACCTAGCCCAAAGTTATATCGAAACGGGAATTTTATCCTTAATGGAAGAA
GGAGGAGCCGGCAATGGGCATCCGTATACTGCTTTTTTTGGCAGGGGCTACCATCAGTTAACATGGGCTGGCAATTATCG
AGGATACGGCGAGTTCAAAAACCTCCCACAGCATACAGGCGCTTACTCTGACAGAAGAATTACCCGAACATCACAGCACC
CCCTGGACTCGGGAGGAACACTTATCACATGGTCACCACGCTATGATCCGGCGACAATCTCATCCGACCTCGATCACGCT
GGAGAATCCAGTGGATTTTTCTGGGCATCCAAAAGCTTTCGAGGCAAAAAAAATATGAACCGAGTTGCGGACTTGGAATT
TAATGAGTCATCAGTAGGGTTCTGTTGCTGGCTTATTAATGGTGGTGGGGCAGGCTATTCTAACCGACAGCAATTTGCTA
AGTTTCTCGCCAACATCCTTCTTGACGAACCATTAAAATCTGGCCAAGTTAACTTTACCTACCCCGCATTGTCACCACCA
GGGAACCCTGCACTCTGTACCAGCTTCCCCCCTGCGACAGTCCCTTACACAGAAAGGCAGATCATCGATTATGAACCTCA
AATTCCTCCTGTGTAG