Detailed information of component protein


Summary

Component ID T6CP002899
Component protein type TssI
T6SS ID (Type) T6SS00287 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (478 a.a.); Nucleotide sequence (1434 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS17660
Coordinate (Strand) 3875857..3877290 (+)
NCBI ID WP_012445677.1
RefSeq NC_010717
Uniprot ID A0A0K0GMS6_XANOP
KEGG ID xop:PXO_02038
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF2345 PF10106.11 2.6e-47 304..452
T6SS_Vgr PF13296.8 2.7e-30 150..254
Phage_base_V PF04717.14 1.6e-11 72..121
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-477 VPAATPLRALPQDRSRMPGPQSARVVGVADAALSPSRDHQVRIQFPWQRGDQPTPGGLTDSASTAPGHAPGDQRAGTWVPVAEWVAGPNWGSHFLPRIGSEVLVEFLHGDIDQPRITGQLYNGEVAPPFGGGLDARASHPGTLSGLHTQSHDGSGTQQWLLDDTPGQLRTRLHTSLADTRLELGYLVQHSDTARGALRGQGFELASQGWGNVHAAQGLLLSSSARGQGASTALDVAEAVAQLHGAQRTAQALHATLTQQQVPGLDAHPSVTQLREAIDPQAQGKYTAAVGGQAATKPADGGRDGQAPVERFAQARLLGESPDHIAWTTPASAVAYAGQALQLTVQQDAQLSAGQTLSAVSGQHTALFAQRGPIKLIAAAGPVSLQAHTGALELLADQAVTVTATDTRIDVLAQHKIVLQAGQTRITLEGGDITFACPGQFTVKASMHPFLGGESGSAALPPLPDSLKKPDGTAPFSV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8820 - -


  Protein sequence: 478 a.a.    

>T6CP002899 NC_010717:3875857-3877290 [Xanthomonas oryzae pv. oryzae PXO99A] [TssI]
VPAATPLRALPQDRSRMPGPQSARVVGVADAALSPSRDHQVRIQFPWQRGDQPTPGGLTDSASTAPGHAPGDQRAGTWVP
VAEWVAGPNWGSHFLPRIGSEVLVEFLHGDIDQPRITGQLYNGEVAPPFGGGLDARASHPGTLSGLHTQSHDGSGTQQWL
LDDTPGQLRTRLHTSLADTRLELGYLVQHSDTARGALRGQGFELASQGWGNVHAAQGLLLSSSARGQGASTALDVAEAVA
QLHGAQRTAQALHATLTQQQVPGLDAHPSVTQLREAIDPQAQGKYTAAVGGQAATKPADGGRDGQAPVERFAQARLLGES
PDHIAWTTPASAVAYAGQALQLTVQQDAQLSAGQTLSAVSGQHTALFAQRGPIKLIAAAGPVSLQAHTGALELLADQAVT
VTATDTRIDVLAQHKIVLQAGQTRITLEGGDITFACPGQFTVKASMHPFLGGESGSAALPPLPDSLKKPDGTAPFSV*

  Nucleotide sequence: 1434 bp    

>T6CP002899 NC_010717:3875857-3877290 [Xanthomonas oryzae pv. oryzae PXO99A] [TssI]
GTGCCGGCGGCCACGCCCTTGCGCGCGCTGCCGCAGGACCGCTCGCGCATGCCCGGGCCGCAGAGCGCGCGCGTGGTCGG
CGTGGCCGACGCGGCGCTGAGCCCGAGCCGCGACCACCAGGTGCGGATCCAGTTCCCGTGGCAGCGCGGCGACCAGCCCA
CCCCGGGCGGGTTGACCGACAGCGCCAGCACCGCGCCCGGCCACGCGCCGGGCGACCAGCGCGCCGGCACCTGGGTGCCG
GTGGCCGAGTGGGTGGCCGGCCCGAACTGGGGCAGCCACTTCCTGCCGCGCATCGGCAGCGAAGTGCTGGTGGAGTTCCT
GCACGGAGACATCGATCAGCCGCGCATCACCGGCCAGTTGTACAACGGCGAGGTCGCCCCACCCTTCGGCGGCGGCCTGG
ACGCGCGTGCCAGCCACCCCGGCACGCTCAGCGGCCTGCACACCCAGTCCCACGACGGCAGCGGCACCCAGCAATGGCTG
CTGGACGACACCCCCGGCCAGCTGCGCACGCGCCTGCACACCTCGCTGGCCGACACCCGGCTGGAACTGGGCTACCTGGT
CCAGCACAGCGACACCGCCCGCGGCGCGCTGCGCGGCCAGGGCTTCGAACTGGCCTCCCAGGGCTGGGGCAACGTGCATG
CCGCGCAAGGCCTGCTGCTGTCCAGCAGCGCCCGCGGCCAGGGCGCCTCGACCGCATTGGACGTGGCCGAGGCGGTGGCC
CAGTTGCACGGCGCCCAACGCACCGCCCAGGCGCTGCACGCCACCCTGACCCAGCAACAGGTGCCCGGCCTGGACGCCCA
TCCCAGCGTGACCCAACTGCGCGAGGCCATCGACCCGCAGGCGCAGGGCAAGTACACCGCTGCGGTCGGCGGCCAGGCGG
CGACCAAGCCGGCCGACGGCGGCCGCGACGGCCAGGCACCGGTGGAACGCTTCGCCCAGGCGCGCCTGCTCGGCGAGTCG
CCGGACCACATCGCCTGGACCACCCCGGCCAGCGCGGTGGCCTATGCCGGGCAGGCCCTGCAGTTGACCGTGCAGCAGGA
TGCGCAGCTGAGCGCCGGGCAGACCCTGTCGGCGGTGTCCGGCCAGCACACCGCGCTGTTCGCCCAACGCGGGCCGATCA
AACTCATCGCCGCCGCCGGCCCGGTGAGCCTGCAGGCACATACCGGCGCGCTGGAACTGCTGGCCGACCAGGCGGTGACC
GTCACCGCCACCGACACCCGCATCGACGTGCTGGCGCAGCACAAGATCGTGCTGCAGGCCGGACAGACCCGCATCACCCT
GGAAGGCGGCGACATCACCTTCGCCTGCCCGGGGCAGTTCACGGTCAAGGCCAGCATGCATCCGTTCTTGGGTGGGGAGA
GCGGCAGTGCCGCCCTGCCGCCTTTGCCTGACAGCTTGAAGAAGCCCGATGGCACTGCACCTTTCTCCGTCTAA