Detailed information of component protein


Summary

Component ID T6CP002898
Component protein type TssI
T6SS ID (Type) T6SS00287 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (965 a.a.); Nucleotide sequence (2895 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS17655
Coordinate (Strand) 3872128..3875022 (+)
NCBI ID WP_012445676.1
RefSeq NC_010717
Uniprot ID A0A0K0GNJ7_XANOP
KEGG ID xop:PXO_02039
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Glyco_hydro_19 PF00182.21 9.3e-08 832..903
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-964 MADTEQKKLAKISKLVHPFQKSAKAGKAGAKPTDIDDPQVYFDALSNAQDGFYPIGANGQWHGGIHFDTQTGNTLAQEDGIRCIGDGEVVAYQIDAKYPSIEYSAGKATYSRGFVLVRHRLELPPAPKQTTQPAPAGPSAANTAPATPQPVAQPAATLDQKAQEPSLIFYSVYLHLLDWAGYQADPKKPRPAFWKSVAYMVGDKAKDSDRVSNPSIPEGGVGLNLRDAQHQKVGYAPRGAKLRLGAENPNKKGYFVISEVVSGQTVPADAKGLYAYKAELTAAGAEPDRQDAVYVLPTPAPIKAGDLIGYLGHYQRFADLTPLAAAGPAQNGVRPLIQLDVFTAEDLKTFIAKSRERAKLLDAKQKTLLKIDVGAKLVLPSEPDQQIGAEEAAAVVPGGKVGAWVQVRKGTLQIMDKDSLSGFNSTTHTYGGGQILHRVLGASDSDSITEAAYNALKTKEEKDKYPRRQVLVPSGAPVWVDKAMMGADASVADRSLKAWSTFPLQASQANGPEAGFIRVAAIKTLKKVATEPDGTRWWEVDVGKIDGSSAVGWAREKDHAKVTRCSPWEWPGFEFIEADGTTPEALYARHVVATKQAKPDEQAALEAKAAQANGGPLFSRVCDAIDLDDDRHLTPAELRKALKQPWLAEAISRLVFHHTSEWGTPRAQWNAIDGDIPESRKADWEKEKDRIESLQWWSDVKTTPALPGDAKVYAFHPIGLISNFSSPSECCQLTMASFRSIFGDRKIFNHRDMPRGGDTYEADIQKFIDLLNDGFSKNGFETCIYKQHFLAQCYHESDHFNTTIEYASGLDYDLSKYPTSVCDVNSSEYDKKKCRRRNQIIQEGNTTIGDGPTYKGKGIIQLTWKGTYNAYKEYSGSDVVSNPMKVAEDLATAVSTAFWFWAKFKGEDLNRKIDRYYEEGAKSGLNSEALDDDVVRRLTKIINGGDRGLSERQNLLKKIKKEMQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9605 - -


  Protein sequence: 965 a.a.    

>T6CP002898 NC_010717:3872128-3875022 [Xanthomonas oryzae pv. oryzae PXO99A] [TssI]
MADTEQKKLAKISKLVHPFQKSAKAGKAGAKPTDIDDPQVYFDALSNAQDGFYPIGANGQWHGGIHFDTQTGNTLAQEDG
IRCIGDGEVVAYQIDAKYPSIEYSAGKATYSRGFVLVRHRLELPPAPKQTTQPAPAGPSAANTAPATPQPVAQPAATLDQ
KAQEPSLIFYSVYLHLLDWAGYQADPKKPRPAFWKSVAYMVGDKAKDSDRVSNPSIPEGGVGLNLRDAQHQKVGYAPRGA
KLRLGAENPNKKGYFVISEVVSGQTVPADAKGLYAYKAELTAAGAEPDRQDAVYVLPTPAPIKAGDLIGYLGHYQRFADL
TPLAAAGPAQNGVRPLIQLDVFTAEDLKTFIAKSRERAKLLDAKQKTLLKIDVGAKLVLPSEPDQQIGAEEAAAVVPGGK
VGAWVQVRKGTLQIMDKDSLSGFNSTTHTYGGGQILHRVLGASDSDSITEAAYNALKTKEEKDKYPRRQVLVPSGAPVWV
DKAMMGADASVADRSLKAWSTFPLQASQANGPEAGFIRVAAIKTLKKVATEPDGTRWWEVDVGKIDGSSAVGWAREKDHA
KVTRCSPWEWPGFEFIEADGTTPEALYARHVVATKQAKPDEQAALEAKAAQANGGPLFSRVCDAIDLDDDRHLTPAELRK
ALKQPWLAEAISRLVFHHTSEWGTPRAQWNAIDGDIPESRKADWEKEKDRIESLQWWSDVKTTPALPGDAKVYAFHPIGL
ISNFSSPSECCQLTMASFRSIFGDRKIFNHRDMPRGGDTYEADIQKFIDLLNDGFSKNGFETCIYKQHFLAQCYHESDHF
NTTIEYASGLDYDLSKYPTSVCDVNSSEYDKKKCRRRNQIIQEGNTTIGDGPTYKGKGIIQLTWKGTYNAYKEYSGSDVV
SNPMKVAEDLATAVSTAFWFWAKFKGEDLNRKIDRYYEEGAKSGLNSEALDDDVVRRLTKIINGGDRGLSERQNLLKKIK
KEMQ*

  Nucleotide sequence: 2895 bp    

>T6CP002898 NC_010717:3872128-3875022 [Xanthomonas oryzae pv. oryzae PXO99A] [TssI]
ATGGCAGATACCGAGCAGAAGAAACTGGCGAAGATCAGCAAATTAGTCCATCCGTTCCAGAAAAGCGCAAAGGCAGGCAA
GGCCGGCGCCAAGCCGACCGACATCGACGATCCGCAGGTCTATTTCGATGCGCTTTCCAACGCACAGGACGGGTTCTACC
CCATCGGTGCCAACGGGCAATGGCACGGCGGCATCCATTTCGATACGCAAACCGGCAACACCCTGGCGCAGGAAGACGGC
ATCCGCTGCATCGGCGATGGCGAGGTCGTGGCGTACCAGATCGATGCGAAGTACCCCAGCATCGAGTACAGCGCCGGCAA
GGCCACCTACTCACGCGGCTTCGTGCTGGTCCGCCACCGCCTGGAGCTGCCGCCTGCGCCCAAGCAGACCACGCAGCCTG
CCCCTGCTGGACCGAGCGCGGCCAACACGGCACCGGCTACGCCACAGCCGGTAGCCCAGCCTGCGGCAACACTCGATCAG
AAGGCGCAAGAGCCTTCGCTGATCTTCTACAGCGTCTATCTCCACCTGCTCGACTGGGCCGGCTACCAAGCCGATCCGAA
GAAGCCGCGCCCGGCGTTCTGGAAGAGCGTGGCCTATATGGTCGGCGACAAGGCCAAGGACAGCGACAGAGTCTCTAACC
CTTCCATTCCGGAAGGAGGCGTAGGCCTTAACCTGCGCGACGCGCAGCATCAGAAGGTCGGCTATGCGCCACGCGGCGCC
AAGCTGCGGCTTGGCGCCGAAAATCCCAACAAAAAGGGCTATTTCGTCATCTCCGAGGTCGTCAGCGGGCAGACCGTTCC
TGCCGACGCAAAAGGCCTGTATGCCTACAAGGCAGAGCTGACCGCCGCCGGCGCCGAGCCCGACCGCCAGGACGCGGTCT
ATGTGTTGCCAACCCCCGCCCCGATCAAAGCCGGCGACTTGATCGGCTATCTCGGTCACTACCAGCGCTTTGCCGATCTC
ACGCCATTGGCGGCAGCCGGCCCCGCGCAGAATGGCGTGCGGCCACTGATCCAGTTGGACGTATTCACCGCAGAAGATCT
CAAGACCTTCATCGCCAAGAGCCGTGAGCGGGCGAAGCTGCTTGATGCCAAGCAAAAGACCCTGCTCAAGATCGACGTGG
GCGCCAAGCTTGTGCTGCCAAGCGAACCGGACCAGCAGATCGGCGCCGAGGAGGCTGCCGCCGTGGTCCCCGGCGGCAAG
GTCGGAGCCTGGGTTCAGGTGCGCAAAGGCACCTTGCAGATCATGGACAAGGACAGCCTGAGCGGCTTCAACAGCACCAC
CCACACCTACGGCGGCGGCCAGATCCTGCATCGCGTGCTCGGTGCCAGCGATAGCGACAGCATCACCGAAGCGGCCTACA
ACGCGCTGAAGACCAAGGAAGAAAAAGACAAGTACCCGCGCCGCCAGGTACTCGTTCCCAGCGGCGCGCCGGTGTGGGTG
GACAAGGCGATGATGGGCGCCGACGCCAGCGTCGCCGACCGCTCGCTCAAGGCGTGGAGCACGTTCCCGCTACAGGCCAG
CCAGGCCAACGGACCGGAGGCGGGCTTCATCCGCGTCGCCGCCATCAAGACACTGAAAAAGGTCGCGACCGAACCGGACG
GCACCCGCTGGTGGGAAGTGGATGTGGGCAAGATCGACGGCAGCAGCGCCGTGGGCTGGGCCAGGGAGAAGGACCATGCC
AAGGTCACCCGCTGCTCGCCGTGGGAGTGGCCGGGTTTCGAGTTCATCGAAGCCGACGGCACTACGCCGGAAGCGCTGTA
CGCACGCCACGTGGTCGCCACCAAGCAAGCCAAGCCTGACGAGCAGGCCGCTTTGGAAGCCAAGGCCGCACAAGCCAATG
GAGGCCCGCTGTTCTCGCGCGTATGCGACGCCATCGACCTGGACGACGACCGTCATCTCACCCCCGCAGAACTGCGCAAG
GCCCTGAAACAGCCCTGGTTGGCGGAGGCGATTTCCCGCCTGGTCTTCCATCACACAAGCGAATGGGGAACGCCGCGTGC
GCAATGGAACGCGATCGACGGCGATATCCCAGAATCGCGCAAGGCGGATTGGGAGAAGGAAAAGGATCGGATTGAAAGCC
TGCAGTGGTGGAGCGACGTAAAAACCACTCCGGCTTTGCCGGGGGATGCCAAGGTTTATGCTTTCCATCCTATTGGGTTG
ATTAGTAATTTTTCTTCTCCATCGGAATGCTGCCAACTTACCATGGCATCGTTTCGATCTATTTTTGGAGACCGAAAGAT
ATTCAACCATCGCGACATGCCACGCGGTGGTGACACATACGAAGCTGACATACAAAAATTTATTGACTTACTCAATGATG
GATTTTCAAAAAATGGTTTTGAAACGTGCATTTATAAGCAGCACTTTCTCGCACAGTGCTATCACGAAAGCGATCACTTT
AACACCACCATAGAATATGCAAGCGGTCTAGACTACGACTTATCAAAATATCCAACTTCCGTGTGCGATGTTAATAGCTC
GGAATACGACAAGAAGAAATGCAGGCGCCGCAACCAGATCATACAAGAAGGTAATACCACTATTGGCGATGGACCAACCT
ATAAGGGAAAGGGAATCATTCAGCTTACGTGGAAAGGCACGTACAATGCCTACAAGGAATACTCTGGCTCGGATGTTGTG
AGCAACCCAATGAAGGTAGCCGAAGATCTAGCCACAGCTGTTAGTACGGCATTTTGGTTCTGGGCAAAATTTAAAGGAGA
GGACCTCAATAGAAAGATAGATCGCTATTACGAAGAAGGGGCTAAATCCGGCCTTAATTCGGAAGCCCTTGATGATGACG
TTGTTAGAAGATTAACCAAGATAATTAACGGAGGAGATAGAGGGCTTTCCGAACGGCAAAATTTGCTTAAGAAAATTAAA
AAGGAAATGCAATGA