Detailed information of component protein


Summary

Component ID T6CP002897
Component protein type TssI
T6SS ID (Type) T6SS00287 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (848 a.a.); Nucleotide sequence (2544 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS17650
Coordinate (Strand) 3869560..3872103 (+)
NCBI ID WP_012445675.1
RefSeq NC_010717
Uniprot ID A0A0K0GNB7_XANOP
KEGG ID xop:PXO_02040
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.8e-67 41..344
DUF2345 PF10106.11 2e-46 673..821
T6SS_Vgr PF13296.8 6.5e-30 519..623
Phage_base_V PF04717.14 3.7e-11 441..490
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-847 MDIPTLAVALASLAQPSQHARLIQLRAPVEGLVVERFHGQEAVCGATVLQIACLATSAFLDAEALLEQPLDLQLRQADGTQRHWQGLCTEVAQLGGDGGLARYRLTLAPWTALLELRRNALVFQDLDARAICERIFADYPQAAFRFDVQAALPAHPITTQYRETDWAFVTRLLAEAGLAWRYAHAQDADSQATAATLVIFDPQAQVPDSGTIRFHRSDLAEADDAIGAFGERRGVVPTASTVTSWHSEQVRAVGAQAQAQAEAGALPPLEVYVQPRAGRFAQEATAQDQAQARLDALRVPHTLHAGAGSARVLAAGAAFTLRQHAQHDGQHFVPVAIEHVAVNNLGQGIVALLDAPELEHGSYRNRFLAVPAATPLRALPQDRPRMPGPQSARVVGVADAALSPSRDHQVRIQFPWQRGDQPTPGGLTDSASTAPGHAPGDQRAGTWVPVAEWVAGPNWGSHFLPRIGSEVLVEFLHGDIDQPRITGQLYNGELAPPFGGGLDAHASHPGTLSGLHTQSHDGSGTQQWLLDDTPGQLRTRLHTSLADTRLELGYLVQHSDTARGALRGQGFELASQGWGNVHAAQGLLLSSSARGQGASTALDVAEAVAQLHGAQRTAQALHATLTQQQVPGLDAHPSVTRLREAIDPQAQGKYTAAVGGQAATTPADGGRDGQAPVERFAQARLLGESPDHIAWTTPASAVAYAGQALQLTVQQDAQLSAGQTLSAVSGQHTALFAQRGPIKLIAAAGPVSLQAHTGALELLADQAVTVTATDTRIDVLAQHKIVLQAGQTCITLEGGDITFACPGQFTVKASTHPFLGGESGNPQFALPDGLVHLEPDRMLDFSG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7000 - -


  Protein sequence: 848 a.a.    

>T6CP002897 NC_010717:3869560-3872103 [Xanthomonas oryzae pv. oryzae PXO99A] [TssI]
MDIPTLAVALASLAQPSQHARLIQLRAPVEGLVVERFHGQEAVCGATVLQIACLATSAFLDAEALLEQPLDLQLRQADGT
QRHWQGLCTEVAQLGGDGGLARYRLTLAPWTALLELRRNALVFQDLDARAICERIFADYPQAAFRFDVQAALPAHPITTQ
YRETDWAFVTRLLAEAGLAWRYAHAQDADSQATAATLVIFDPQAQVPDSGTIRFHRSDLAEADDAIGAFGERRGVVPTAS
TVTSWHSEQVRAVGAQAQAQAEAGALPPLEVYVQPRAGRFAQEATAQDQAQARLDALRVPHTLHAGAGSARVLAAGAAFT
LRQHAQHDGQHFVPVAIEHVAVNNLGQGIVALLDAPELEHGSYRNRFLAVPAATPLRALPQDRPRMPGPQSARVVGVADA
ALSPSRDHQVRIQFPWQRGDQPTPGGLTDSASTAPGHAPGDQRAGTWVPVAEWVAGPNWGSHFLPRIGSEVLVEFLHGDI
DQPRITGQLYNGELAPPFGGGLDAHASHPGTLSGLHTQSHDGSGTQQWLLDDTPGQLRTRLHTSLADTRLELGYLVQHSD
TARGALRGQGFELASQGWGNVHAAQGLLLSSSARGQGASTALDVAEAVAQLHGAQRTAQALHATLTQQQVPGLDAHPSVT
RLREAIDPQAQGKYTAAVGGQAATTPADGGRDGQAPVERFAQARLLGESPDHIAWTTPASAVAYAGQALQLTVQQDAQLS
AGQTLSAVSGQHTALFAQRGPIKLIAAAGPVSLQAHTGALELLADQAVTVTATDTRIDVLAQHKIVLQAGQTCITLEGGD
ITFACPGQFTVKASTHPFLGGESGNPQFALPDGLVHLEPDRMLDFSG*

  Nucleotide sequence: 2544 bp    

>T6CP002897 NC_010717:3869560-3872103 [Xanthomonas oryzae pv. oryzae PXO99A] [TssI]
ATGGATATCCCGACGCTGGCCGTCGCCCTGGCTAGTCTGGCGCAGCCGTCCCAACATGCCCGCCTGATCCAACTGCGCGC
CCCGGTCGAGGGGCTGGTGGTGGAACGCTTCCACGGGCAGGAGGCGGTGTGCGGCGCCACCGTGCTGCAGATCGCGTGCC
TGGCCACCTCGGCGTTTCTCGATGCCGAGGCGCTGCTGGAGCAGCCACTGGACCTGCAGCTGCGCCAGGCCGACGGCACG
CAACGCCACTGGCAGGGCCTGTGCACCGAAGTGGCGCAACTGGGCGGCGACGGCGGCCTGGCCCGCTACCGGCTGACCCT
GGCGCCGTGGACGGCGCTGCTGGAGCTGCGGCGCAACGCGCTGGTGTTCCAGGACCTGGACGCGCGCGCGATCTGCGAAC
GGATCTTCGCCGACTACCCGCAGGCCGCGTTCCGCTTCGACGTGCAGGCCGCGTTGCCGGCGCACCCGATCACCACCCAA
TACCGCGAGACCGACTGGGCCTTCGTCACCCGCCTGCTGGCCGAGGCCGGCCTGGCCTGGCGCTACGCGCACGCGCAGGA
CGCCGACAGCCAGGCCACCGCGGCCACGCTGGTGATCTTCGACCCGCAGGCGCAGGTGCCGGACAGCGGCACGATCCGCT
TCCACCGCAGCGACCTGGCCGAGGCCGACGATGCGATCGGCGCCTTCGGCGAGCGCCGCGGCGTCGTGCCCACCGCCAGC
ACGGTGACCAGCTGGCACAGCGAGCAAGTGCGCGCGGTCGGCGCGCAGGCCCAGGCCCAGGCCGAGGCCGGCGCGCTGCC
GCCGCTGGAGGTCTACGTGCAGCCGCGCGCCGGGCGTTTCGCCCAGGAGGCGACCGCGCAGGATCAGGCGCAGGCGCGGC
TGGACGCGCTGCGCGTGCCGCACACGCTGCACGCCGGGGCCGGCAGCGCCCGCGTGCTGGCGGCCGGGGCGGCGTTCACC
TTGCGCCAGCACGCCCAGCACGACGGCCAGCATTTCGTTCCGGTGGCGATCGAGCACGTGGCGGTGAACAACCTGGGCCA
GGGCATCGTCGCCCTGCTGGACGCGCCGGAGCTGGAGCACGGCAGCTACCGCAACCGTTTCCTGGCGGTGCCGGCGGCCA
CGCCGCTGCGCGCGCTGCCGCAGGACCGCCCGCGCATGCCCGGGCCGCAGAGCGCGCGCGTGGTCGGCGTGGCCGACGCG
GCGCTGAGCCCGAGCCGCGACCACCAGGTGCGGATCCAGTTCCCGTGGCAGCGCGGCGACCAGCCCACCCCGGGCGGGTT
GACCGACAGCGCCAGCACCGCGCCCGGCCACGCGCCGGGCGACCAGCGCGCCGGCACCTGGGTGCCGGTGGCCGAGTGGG
TGGCCGGCCCGAACTGGGGCAGCCACTTCCTGCCGCGCATCGGCAGCGAAGTGCTGGTGGAGTTCCTGCACGGGGACATC
GATCAGCCGCGCATCACCGGCCAGTTGTACAACGGCGAGCTCGCCCCACCCTTCGGCGGCGGCCTGGACGCGCATGCCAG
CCACCCCGGCACGCTCAGCGGCCTGCACACCCAGTCCCACGACGGCAGCGGCACCCAGCAATGGCTGCTGGACGACACCC
CCGGCCAGCTGCGCACGCGCCTGCACACCTCGCTGGCCGACACCCGGCTGGAACTGGGCTACCTGGTCCAGCACAGCGAC
ACCGCCCGCGGCGCGCTGCGCGGCCAGGGCTTCGAACTGGCCTCCCAGGGCTGGGGCAACGTGCATGCCGCGCAAGGCCT
GCTGCTGTCCAGCAGCGCCCGCGGCCAGGGCGCCTCGACCGCATTGGACGTGGCCGAGGCGGTGGCCCAGTTGCACGGCG
CCCAACGCACCGCTCAGGCGCTGCACGCCACCCTGACCCAGCAACAGGTGCCCGGCCTGGACGCCCATCCCAGCGTGACC
CGGCTGCGCGAGGCCATCGACCCGCAAGCGCAGGGCAAGTACACCGCTGCGGTCGGCGGCCAGGCAGCGACCACGCCGGC
CGACGGCGGCCGCGACGGCCAGGCACCGGTGGAACGCTTCGCCCAGGCGCGCCTGCTCGGCGAGTCGCCGGACCACATCG
CCTGGACCACCCCGGCCAGCGCGGTGGCCTATGCCGGGCAGGCCCTGCAGTTGACCGTGCAGCAGGATGCGCAGCTGAGC
GCCGGGCAGACCCTGTCGGCGGTGTCCGGCCAGCACACCGCGCTGTTCGCCCAACGCGGGCCGATCAAACTCATCGCCGC
CGCCGGCCCGGTGAGCCTGCAAGCACATACCGGCGCGCTGGAACTGCTGGCCGACCAGGCGGTGACCGTCACCGCCACCG
ACACCCGCATCGACGTGCTGGCGCAGCACAAGATCGTGCTGCAGGCCGGACAGACCTGCATCACCCTGGAAGGCGGCGAC
ATCACCTTCGCCTGCCCGGGGCAGTTCACGGTCAAGGCCAGCACGCATCCGTTCTTGGGTGGGGAGAGCGGCAACCCCCA
ATTCGCCTTGCCCGATGGGCTGGTGCATCTGGAACCAGACCGCATGCTCGATTTCTCGGGCTGA