Detailed information of component protein
Summary
| Component ID | T6CP002896 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00287  (Type i4b) |
| Strain | Xanthomonas oryzae pv. oryzae PXO99A |
| Replicon | chromosome |
| Sequence | Protein sequence (264 a.a.); Nucleotide sequence (792 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PXO_RS17645 |
| Coordinate (Strand) | 3868758..3869549 (+) |
| NCBI ID | WP_181687728.1 |
| RefSeq | NC_010717 |
| Uniprot ID | UPI00030C003A |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 1.3e-55 | 33..232 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-211 | MMNPLPPTPGPMPSLTAQAPHGLPSAHTSTPQSLLDLMADGFYLLLLLKRTQMPSDTESFVQSVQTFLDGVERGAVKLGIASEDIYAAKYAFCAAVDEAILSQPSALHETWERNPLQLRLFGEHLAGEHFFDRLEELRRQGAVRLPSLEIYHYCLLLGFEGKYRLEGPEKLGYLTARLGDEIIYFKGKRSGFAPHWPPPDNVRHALRRVVP |
| Transmembrane helix | 212-234 | LWLPAALVTGFGLLGFFGLRLSL |
| Inside | 235-263 | DHQTERRMAAYNQVVQMPQRTAHITITLP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.8891 | - | - |
Protein sequence: 264 a.a.
>T6CP002896 NC_010717:3868758-3869549 [Xanthomonas oryzae pv. oryzae PXO99A] [TssL]
MMNPLPPTPGPMPSLTAQAPHGLPSAHTSTPQSLLDLMADGFYLLLLLKRTQMPSDTESFVQSVQTFLDGVERGAVKLGI
ASEDIYAAKYAFCAAVDEAILSQPSALHETWERNPLQLRLFGEHLAGEHFFDRLEELRRQGAVRLPSLEIYHYCLLLGFE
GKYRLEGPEKLGYLTARLGDEIIYFKGKRSGFAPHWPPPDNVRHALRRVVPLWLPAALVTGFGLLGFFGLRLSLDHQTER
RMAAYNQVVQMPQRTAHITITLP*
MMNPLPPTPGPMPSLTAQAPHGLPSAHTSTPQSLLDLMADGFYLLLLLKRTQMPSDTESFVQSVQTFLDGVERGAVKLGI
ASEDIYAAKYAFCAAVDEAILSQPSALHETWERNPLQLRLFGEHLAGEHFFDRLEELRRQGAVRLPSLEIYHYCLLLGFE
GKYRLEGPEKLGYLTARLGDEIIYFKGKRSGFAPHWPPPDNVRHALRRVVPLWLPAALVTGFGLLGFFGLRLSLDHQTER
RMAAYNQVVQMPQRTAHITITLP*
Nucleotide sequence: 792 bp
>T6CP002896 NC_010717:3868758-3869549 [Xanthomonas oryzae pv. oryzae PXO99A] [TssL]
ATGATGAACCCGCTGCCCCCCACCCCCGGCCCGATGCCGTCGCTGACCGCGCAGGCACCGCACGGCCTGCCGAGCGCCCA
TACCTCCACGCCGCAGAGCCTGCTCGACCTGATGGCCGACGGCTTCTACCTGTTGCTGCTGCTCAAGCGCACGCAGATGC
CCAGCGACACCGAATCCTTCGTGCAGTCGGTGCAGACATTCCTCGATGGCGTGGAACGCGGCGCAGTCAAGCTCGGCATC
GCCTCCGAGGACATCTACGCGGCCAAATACGCGTTCTGCGCGGCAGTAGACGAAGCGATCCTGTCGCAGCCCTCGGCACT
GCACGAAACCTGGGAACGCAATCCGCTGCAGCTGCGCCTGTTCGGCGAACACCTGGCCGGCGAGCATTTCTTCGATCGCC
TGGAAGAGCTGCGCCGCCAGGGCGCCGTGCGCCTGCCCTCGCTGGAGATCTACCACTATTGCCTGCTGCTTGGCTTCGAA
GGCAAGTATCGGCTGGAAGGGCCGGAAAAGCTCGGCTACCTGACCGCGCGGCTGGGCGACGAGATCATCTATTTCAAGGG
CAAGCGCAGCGGTTTCGCACCGCATTGGCCGCCGCCGGACAACGTGCGCCATGCCTTGCGCCGTGTGGTGCCGCTGTGGC
TGCCGGCCGCGCTGGTGACCGGCTTCGGCCTGCTCGGCTTCTTCGGTCTGCGCCTGTCTCTGGACCACCAGACCGAGCGG
CGCATGGCCGCCTACAACCAGGTGGTGCAGATGCCGCAACGCACCGCGCACATTACGATCACCCTGCCGTGA
ATGATGAACCCGCTGCCCCCCACCCCCGGCCCGATGCCGTCGCTGACCGCGCAGGCACCGCACGGCCTGCCGAGCGCCCA
TACCTCCACGCCGCAGAGCCTGCTCGACCTGATGGCCGACGGCTTCTACCTGTTGCTGCTGCTCAAGCGCACGCAGATGC
CCAGCGACACCGAATCCTTCGTGCAGTCGGTGCAGACATTCCTCGATGGCGTGGAACGCGGCGCAGTCAAGCTCGGCATC
GCCTCCGAGGACATCTACGCGGCCAAATACGCGTTCTGCGCGGCAGTAGACGAAGCGATCCTGTCGCAGCCCTCGGCACT
GCACGAAACCTGGGAACGCAATCCGCTGCAGCTGCGCCTGTTCGGCGAACACCTGGCCGGCGAGCATTTCTTCGATCGCC
TGGAAGAGCTGCGCCGCCAGGGCGCCGTGCGCCTGCCCTCGCTGGAGATCTACCACTATTGCCTGCTGCTTGGCTTCGAA
GGCAAGTATCGGCTGGAAGGGCCGGAAAAGCTCGGCTACCTGACCGCGCGGCTGGGCGACGAGATCATCTATTTCAAGGG
CAAGCGCAGCGGTTTCGCACCGCATTGGCCGCCGCCGGACAACGTGCGCCATGCCTTGCGCCGTGTGGTGCCGCTGTGGC
TGCCGGCCGCGCTGGTGACCGGCTTCGGCCTGCTCGGCTTCTTCGGTCTGCGCCTGTCTCTGGACCACCAGACCGAGCGG
CGCATGGCCGCCTACAACCAGGTGGTGCAGATGCCGCAACGCACCGCGCACATTACGATCACCCTGCCGTGA