Detailed information of component protein


Summary

Component ID T6CP002895
Component protein type TssK
T6SS ID (Type) T6SS00287 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS17640
Coordinate (Strand) 3867427..3868761 (+)
NCBI ID WP_011259947.1
RefSeq NC_010717
Uniprot ID A0A7U4NBX0_9XANT, G7TI15_XANOB, A0A346MBX7_XANOO
KEGG ID xor:XOC_1350
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 3.4e-140 16..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MSKVFWGEGLFLRPQHFQRQDTYHEARLQDLAQTLHPYGWGTRRIRFDPQSMASGSLRALALSVVFPDGESYDAPAHDALPDALSLNDLPAGIQTTTVYLALPLLRDDGGNCSDAEGSQLARYQQLNRPTSDLYTDAAQSELAYLSKAVKLLTDDTPRDPYVTVPVARVRRTPTGGFELDEDFIPSCAHIDASPTLYRELRGLLDSLQAKVDALYGLHRQSSQHIIEFRSGDIASFWLLHTACSSFGALSHLFHHPQLHPERLYQELLRMAGALLTFSNAYQLNDLPRYNHAAPEACFQRLFQIVRDLLDTVISARYFKIALTEVKPSFHLGRIDSQRIDENAAFYLSVSADMPGPELVQTVPVRFKIGAPDDVEKCVLSALPGVKLTHAAQVPAAIPVRPGSYYFALEARGPLYERMLKAQSMMLYVPSGIDDLKMELVAVTS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9894 - -


  Protein sequence: 445 a.a.    

>T6CP002895 NC_010717:3867427-3868761 [Xanthomonas oryzae pv. oryzae PXO99A] [TssK]
MSKVFWGEGLFLRPQHFQRQDTYHEARLQDLAQTLHPYGWGTRRIRFDPQSMASGSLRALALSVVFPDGESYDAPAHDAL
PDALSLNDLPAGIQTTTVYLALPLLRDDGGNCSDAEGSQLARYQQLNRPTSDLYTDAAQSELAYLSKAVKLLTDDTPRDP
YVTVPVARVRRTPTGGFELDEDFIPSCAHIDASPTLYRELRGLLDSLQAKVDALYGLHRQSSQHIIEFRSGDIASFWLLH
TACSSFGALSHLFHHPQLHPERLYQELLRMAGALLTFSNAYQLNDLPRYNHAAPEACFQRLFQIVRDLLDTVISARYFKI
ALTEVKPSFHLGRIDSQRIDENAAFYLSVSADMPGPELVQTVPVRFKIGAPDDVEKCVLSALPGVKLTHAAQVPAAIPVR
PGSYYFALEARGPLYERMLKAQSMMLYVPSGIDDLKMELVAVTS*

  Nucleotide sequence: 1335 bp    

>T6CP002895 NC_010717:3867427-3868761 [Xanthomonas oryzae pv. oryzae PXO99A] [TssK]
ATGTCGAAAGTATTTTGGGGCGAAGGTCTGTTTTTGCGGCCGCAGCATTTCCAGCGCCAGGACACCTACCACGAAGCAAG
GCTGCAGGATCTGGCGCAGACGCTGCATCCCTATGGCTGGGGAACGCGCCGGATCCGTTTCGATCCGCAGAGCATGGCTA
GCGGCAGCTTGCGCGCGCTCGCCCTGTCGGTGGTCTTTCCCGATGGCGAATCGTACGACGCGCCGGCGCACGACGCGCTG
CCCGATGCGCTGTCGCTGAATGACCTCCCCGCCGGCATCCAGACCACCACGGTGTACCTGGCGCTGCCGTTGCTGCGCGA
CGACGGCGGCAACTGTAGCGATGCGGAGGGTTCGCAACTGGCCCGCTACCAGCAGCTCAACCGGCCGACCAGCGACCTGT
ACACCGACGCGGCCCAATCGGAACTGGCGTACCTGAGCAAGGCGGTGAAGCTGCTCACCGACGACACTCCGCGCGATCCG
TACGTGACCGTGCCGGTGGCGCGCGTGCGCCGTACCCCGACCGGCGGCTTCGAGCTGGACGAGGACTTCATCCCGTCATG
CGCACACATCGACGCCTCGCCGACGCTGTATCGCGAACTGCGCGGCCTGCTCGACTCGCTGCAGGCCAAGGTCGACGCGC
TGTACGGGCTGCATCGGCAATCGTCGCAGCACATCATCGAATTCCGCTCCGGCGACATCGCCTCGTTCTGGCTGCTGCAT
ACCGCCTGTTCCTCGTTCGGCGCGCTGTCGCACCTGTTCCATCATCCGCAGCTGCACCCCGAGCGCCTGTACCAGGAACT
GCTGCGCATGGCCGGCGCGTTGCTGACGTTCTCCAACGCCTACCAGCTCAACGACCTGCCCCGGTACAACCACGCGGCGC
CGGAAGCCTGCTTCCAGCGCCTGTTCCAGATCGTGCGCGACCTGCTCGACACGGTGATCTCGGCGCGCTACTTCAAGATC
GCGCTGACCGAGGTCAAGCCGTCGTTCCACCTGGGCCGGATCGATTCGCAGCGGATCGACGAGAACGCCGCGTTCTACCT
GAGCGTGTCGGCCGACATGCCCGGGCCGGAACTGGTGCAGACGGTGCCGGTGCGGTTCAAGATCGGTGCGCCGGACGACG
TCGAGAAGTGCGTGCTGTCGGCCCTGCCGGGCGTGAAGCTGACCCACGCCGCGCAGGTGCCGGCAGCGATCCCGGTCCGT
CCCGGCAGCTACTATTTCGCCCTGGAAGCGCGCGGGCCGCTGTACGAGCGCATGCTCAAGGCGCAGTCTATGATGCTCTA
TGTGCCGTCAGGCATTGATGACCTCAAGATGGAACTTGTCGCGGTAACCTCATGA