Detailed information of component protein
Summary
| Component ID | T6CP002894 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00287  (Type i4b) |
| Strain | Xanthomonas oryzae pv. oryzae PXO99A |
| Replicon | chromosome |
| Sequence | Protein sequence (203 a.a.); Nucleotide sequence (609 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PXO_RS17635 |
| Coordinate (Strand) | 3866667..3867275 (+) |
| NCBI ID | WP_011409206.1 |
| RefSeq | NC_010717 |
| Uniprot ID | A0A0K0GMS1_XANOP |
| KEGG ID | xop:PXO_02043 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 7.1e-25 | 54..171 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-6 | MNISAH |
| Transmembrane helix | 7-29 | RFNFLLVLIVAALALSGCASGGI |
| Outside | 30-202 | GKAMDKTLQAVGIKEAKPEASPMIPLRLFAGSNLNAGSDTHATAAVVKIYHLRSAQRFEQAAFNAFLDQAGEQAALGADLLSVNEIVLTPSARQELNEQMSEGTTTLGVVGLFRAPAEGRWRMAFDTRRKELPTQGITIGIHACALTTASPALVTRLAGDPSSLASVRCAAAR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9967 | pos: 23-24. LSG-CA. | MNISAHRFNFLLVLIVAALALSG |
Protein sequence: 203 a.a.
>T6CP002894 NC_010717:3866667-3867275 [Xanthomonas oryzae pv. oryzae PXO99A] [TssJ]
MNISAHRFNFLLVLIVAALALSGCASGGIGKAMDKTLQAVGIKEAKPEASPMIPLRLFAGSNLNAGSDTHATAAVVKIYH
LRSAQRFEQAAFNAFLDQAGEQAALGADLLSVNEIVLTPSARQELNEQMSEGTTTLGVVGLFRAPAEGRWRMAFDTRRKE
LPTQGITIGIHACALTTASPALVTRLAGDPSSLASVRCAAAR*
MNISAHRFNFLLVLIVAALALSGCASGGIGKAMDKTLQAVGIKEAKPEASPMIPLRLFAGSNLNAGSDTHATAAVVKIYH
LRSAQRFEQAAFNAFLDQAGEQAALGADLLSVNEIVLTPSARQELNEQMSEGTTTLGVVGLFRAPAEGRWRMAFDTRRKE
LPTQGITIGIHACALTTASPALVTRLAGDPSSLASVRCAAAR*
Nucleotide sequence: 609 bp
>T6CP002894 NC_010717:3866667-3867275 [Xanthomonas oryzae pv. oryzae PXO99A] [TssJ]
ATGAACATATCCGCCCACCGTTTCAATTTTCTGTTGGTTCTTATTGTAGCCGCCCTAGCCCTGTCAGGCTGCGCCAGCGG
CGGCATCGGCAAGGCGATGGACAAGACCCTGCAGGCAGTGGGCATCAAGGAAGCAAAGCCAGAGGCGTCTCCGATGATTC
CCCTGCGGCTGTTTGCCGGCAGCAACCTGAATGCGGGCAGCGACACGCACGCCACCGCAGCGGTGGTCAAGATCTATCAC
CTGCGCAGCGCGCAACGCTTCGAGCAGGCCGCGTTCAACGCGTTCCTCGATCAGGCCGGAGAGCAGGCGGCGCTGGGCGC
GGACCTGCTGTCGGTCAACGAGATCGTTCTGACGCCAAGCGCCCGCCAGGAACTGAACGAGCAGATGTCCGAAGGCACCA
CCACCCTGGGCGTGGTGGGCTTGTTCCGCGCGCCGGCCGAGGGCCGCTGGCGCATGGCCTTCGATACGCGACGCAAGGAA
TTGCCGACCCAGGGCATCACCATCGGCATTCACGCCTGCGCGCTGACCACCGCCAGCCCGGCGCTGGTCACCCGCCTGGC
GGGCGATCCCAGCAGCCTGGCGTCGGTGCGTTGCGCCGCTGCGCGCTAG
ATGAACATATCCGCCCACCGTTTCAATTTTCTGTTGGTTCTTATTGTAGCCGCCCTAGCCCTGTCAGGCTGCGCCAGCGG
CGGCATCGGCAAGGCGATGGACAAGACCCTGCAGGCAGTGGGCATCAAGGAAGCAAAGCCAGAGGCGTCTCCGATGATTC
CCCTGCGGCTGTTTGCCGGCAGCAACCTGAATGCGGGCAGCGACACGCACGCCACCGCAGCGGTGGTCAAGATCTATCAC
CTGCGCAGCGCGCAACGCTTCGAGCAGGCCGCGTTCAACGCGTTCCTCGATCAGGCCGGAGAGCAGGCGGCGCTGGGCGC
GGACCTGCTGTCGGTCAACGAGATCGTTCTGACGCCAAGCGCCCGCCAGGAACTGAACGAGCAGATGTCCGAAGGCACCA
CCACCCTGGGCGTGGTGGGCTTGTTCCGCGCGCCGGCCGAGGGCCGCTGGCGCATGGCCTTCGATACGCGACGCAAGGAA
TTGCCGACCCAGGGCATCACCATCGGCATTCACGCCTGCGCGCTGACCACCGCCAGCCCGGCGCTGGTCACCCGCCTGGC
GGGCGATCCCAGCAGCCTGGCGTCGGTGCGTTGCGCCGCTGCGCGCTAG