Detailed information of component protein
Summary
| Component ID | T6CP002893 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00287  (Type i4b) |
| Strain | Xanthomonas oryzae pv. oryzae PXO99A |
| Replicon | chromosome |
| Sequence | Protein sequence (167 a.a.); Nucleotide sequence (501 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PXO_RS17625 |
| Coordinate (Strand) | 3865245..3865745 (-) |
| NCBI ID | WP_011259944.1 |
| RefSeq | NC_010717 |
| Uniprot ID | Q5GX36_XANOR, A0A0K0GNB3_XANOP |
| KEGG ID | xoo:XOO3481, xop:PXO_02045 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1.2e-60 | 12..163 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-166 | MAKKESIQKRLQKIRPPRVQLTYDVEKGDAIEQKELPFVVGVLGDFSGNPEQPLAKVKDRKFVNVDLDNFDEVMEGMAPRAVYRVPNKISDAGGEFRVELKFKSIDDFRPEAVVDQVEPLRKLLESRTKLADLRNKLAGNEKLEDLLTDVLNNTEQLKKLGREKEK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9959 | - | - |
Protein sequence: 167 a.a.
>T6CP002893 NC_010717:c3865745-3865245 [Xanthomonas oryzae pv. oryzae PXO99A] [TssB]
MAKKESIQKRLQKIRPPRVQLTYDVEKGDAIEQKELPFVVGVLGDFSGNPEQPLAKVKDRKFVNVDLDNFDEVMEGMAPR
AVYRVPNKISDAGGEFRVELKFKSIDDFRPEAVVDQVEPLRKLLESRTKLADLRNKLAGNEKLEDLLTDVLNNTEQLKKL
GREKEK*
MAKKESIQKRLQKIRPPRVQLTYDVEKGDAIEQKELPFVVGVLGDFSGNPEQPLAKVKDRKFVNVDLDNFDEVMEGMAPR
AVYRVPNKISDAGGEFRVELKFKSIDDFRPEAVVDQVEPLRKLLESRTKLADLRNKLAGNEKLEDLLTDVLNNTEQLKKL
GREKEK*
Nucleotide sequence: 501 bp
>T6CP002893 NC_010717:c3865745-3865245 [Xanthomonas oryzae pv. oryzae PXO99A] [TssB]
ATGGCTAAGAAGGAAAGCATCCAGAAACGTCTGCAGAAGATTCGGCCGCCGCGCGTGCAGCTGACCTACGACGTGGAAAA
GGGTGACGCGATCGAACAGAAGGAGCTGCCGTTCGTGGTAGGCGTGCTTGGGGATTTCAGCGGCAATCCCGAACAGCCCC
TGGCCAAGGTCAAGGACCGCAAATTCGTCAACGTCGACCTCGACAACTTCGACGAGGTGATGGAGGGAATGGCGCCGCGC
GCGGTTTACCGTGTGCCGAACAAGATCAGCGATGCCGGCGGCGAGTTCCGCGTCGAACTCAAGTTCAAGTCGATCGACGA
CTTCCGTCCGGAGGCTGTGGTCGATCAGGTCGAACCGCTGCGCAAGCTGCTGGAATCGCGCACCAAGCTGGCAGACCTGC
GCAACAAGCTGGCCGGCAACGAGAAGCTCGAAGACCTGCTAACGGACGTGTTGAACAACACCGAACAGCTGAAGAAGCTG
GGTCGGGAAAAGGAGAAGTAA
ATGGCTAAGAAGGAAAGCATCCAGAAACGTCTGCAGAAGATTCGGCCGCCGCGCGTGCAGCTGACCTACGACGTGGAAAA
GGGTGACGCGATCGAACAGAAGGAGCTGCCGTTCGTGGTAGGCGTGCTTGGGGATTTCAGCGGCAATCCCGAACAGCCCC
TGGCCAAGGTCAAGGACCGCAAATTCGTCAACGTCGACCTCGACAACTTCGACGAGGTGATGGAGGGAATGGCGCCGCGC
GCGGTTTACCGTGTGCCGAACAAGATCAGCGATGCCGGCGGCGAGTTCCGCGTCGAACTCAAGTTCAAGTCGATCGACGA
CTTCCGTCCGGAGGCTGTGGTCGATCAGGTCGAACCGCTGCGCAAGCTGCTGGAATCGCGCACCAAGCTGGCAGACCTGC
GCAACAAGCTGGCCGGCAACGAGAAGCTCGAAGACCTGCTAACGGACGTGTTGAACAACACCGAACAGCTGAAGAAGCTG
GGTCGGGAAAAGGAGAAGTAA