Detailed information of component protein


Summary

Component ID T6CP002893
Component protein type TssB
T6SS ID (Type) T6SS00287 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (167 a.a.); Nucleotide sequence (501 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PXO_RS17625
Coordinate (Strand) 3865245..3865745 (-)
NCBI ID WP_011259944.1
RefSeq NC_010717
Uniprot ID Q5GX36_XANOR, A0A0K0GNB3_XANOP
KEGG ID xoo:XOO3481, xop:PXO_02045
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 1.2e-60 12..163

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-166 MAKKESIQKRLQKIRPPRVQLTYDVEKGDAIEQKELPFVVGVLGDFSGNPEQPLAKVKDRKFVNVDLDNFDEVMEGMAPRAVYRVPNKISDAGGEFRVELKFKSIDDFRPEAVVDQVEPLRKLLESRTKLADLRNKLAGNEKLEDLLTDVLNNTEQLKKLGREKEK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9959 - -



  Protein sequence: 167 a.a.    

>T6CP002893 NC_010717:c3865745-3865245 [Xanthomonas oryzae pv. oryzae PXO99A] [TssB]
MAKKESIQKRLQKIRPPRVQLTYDVEKGDAIEQKELPFVVGVLGDFSGNPEQPLAKVKDRKFVNVDLDNFDEVMEGMAPR
AVYRVPNKISDAGGEFRVELKFKSIDDFRPEAVVDQVEPLRKLLESRTKLADLRNKLAGNEKLEDLLTDVLNNTEQLKKL
GREKEK*

  Nucleotide sequence: 501 bp    

>T6CP002893 NC_010717:c3865745-3865245 [Xanthomonas oryzae pv. oryzae PXO99A] [TssB]
ATGGCTAAGAAGGAAAGCATCCAGAAACGTCTGCAGAAGATTCGGCCGCCGCGCGTGCAGCTGACCTACGACGTGGAAAA
GGGTGACGCGATCGAACAGAAGGAGCTGCCGTTCGTGGTAGGCGTGCTTGGGGATTTCAGCGGCAATCCCGAACAGCCCC
TGGCCAAGGTCAAGGACCGCAAATTCGTCAACGTCGACCTCGACAACTTCGACGAGGTGATGGAGGGAATGGCGCCGCGC
GCGGTTTACCGTGTGCCGAACAAGATCAGCGATGCCGGCGGCGAGTTCCGCGTCGAACTCAAGTTCAAGTCGATCGACGA
CTTCCGTCCGGAGGCTGTGGTCGATCAGGTCGAACCGCTGCGCAAGCTGCTGGAATCGCGCACCAAGCTGGCAGACCTGC
GCAACAAGCTGGCCGGCAACGAGAAGCTCGAAGACCTGCTAACGGACGTGTTGAACAACACCGAACAGCTGAAGAAGCTG
GGTCGGGAAAAGGAGAAGTAA