Detailed information of component protein


Summary

Component ID T6CP002892
Component protein type TssC
T6SS ID (Type) T6SS00287 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (499 a.a.); Nucleotide sequence (1497 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS17620
Coordinate (Strand) 3863745..3865241 (-)
NCBI ID WP_011259943.1
RefSeq NC_010717
Uniprot ID Q5GX37_XANOR, A0A0K0GN61_XANOP
KEGG ID xop:PXO_02046, xoo:XOO3480
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 5.4e-139 69..371
VipB_2 PF18945.2 3.1e-47 381..491
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-498 MAAEVSSATHNSAPAALAETGLLDQIVEQSKVAKSETEHQRAKDIISELAKEVLEGTVVVSDNLNLTLDARIAEIDRIISEQLSAVMHAPEFQKLESSWRGLHYMCEQTSTGVTMKIKVFNSPQRDLVRDFKSAIDFDQSALFKKVYEEEFGTFGGAPFGALVGDYYIGRQPEDMYFVEQMSHVAAAAHAPFISAASESMFGLETFTDLGKPRDLAKVFDTVEYAKWKSFRESEDSRYVGLTMPRFLGRLPYNPKDGTTVEGFNFVEDVDAADHSKYLWCNTAYAMATRLTKAFEDYGWCAAIRGVEGGGLVEDLPTHTFRTDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNTDYAAFFGAQSAQKPKKYNTDAANANAILSAQLQYMFAVSRIAHYLKAMMREKIGSFASARNVEDFLNRWISQYVLLDDNAGQEAKAQYPLREASVQVSEVPGKPGVYRAVAFIRPHFQLDELSVSLRLVAELPAGTKKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9126 - -


  Protein sequence: 499 a.a.    

>T6CP002892 NC_010717:c3865241-3863745 [Xanthomonas oryzae pv. oryzae PXO99A] [TssC]
MAAEVSSATHNSAPAALAETGLLDQIVEQSKVAKSETEHQRAKDIISELAKEVLEGTVVVSDNLNLTLDARIAEIDRIIS
EQLSAVMHAPEFQKLESSWRGLHYMCEQTSTGVTMKIKVFNSPQRDLVRDFKSAIDFDQSALFKKVYEEEFGTFGGAPFG
ALVGDYYIGRQPEDMYFVEQMSHVAAAAHAPFISAASESMFGLETFTDLGKPRDLAKVFDTVEYAKWKSFRESEDSRYVG
LTMPRFLGRLPYNPKDGTTVEGFNFVEDVDAADHSKYLWCNTAYAMATRLTKAFEDYGWCAAIRGVEGGGLVEDLPTHTF
RTDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNTDYAAFFGAQSAQKPKKYNTDAANANAILSAQLQYMFAVSRI
AHYLKAMMREKIGSFASARNVEDFLNRWISQYVLLDDNAGQEAKAQYPLREASVQVSEVPGKPGVYRAVAFIRPHFQLDE
LSVSLRLVAELPAGTKKA*

  Nucleotide sequence: 1497 bp    

>T6CP002892 NC_010717:c3865241-3863745 [Xanthomonas oryzae pv. oryzae PXO99A] [TssC]
ATGGCCGCAGAGGTTTCGAGTGCCACCCACAATTCGGCGCCCGCCGCGCTGGCAGAAACAGGCTTGCTCGACCAGATCGT
CGAGCAGAGCAAGGTCGCCAAATCGGAGACCGAGCACCAGCGTGCGAAGGACATCATCTCCGAGCTGGCCAAGGAGGTGC
TGGAAGGTACCGTCGTGGTGTCGGACAACCTCAATCTGACGCTGGACGCGCGCATTGCCGAGATCGATCGGATCATCTCT
GAGCAGCTGAGCGCGGTGATGCATGCGCCGGAGTTCCAGAAGCTGGAGAGCAGCTGGCGCGGCCTGCACTACATGTGCGA
GCAGACGTCCACCGGCGTGACGATGAAGATCAAGGTCTTCAACTCGCCCCAACGGGATCTGGTGCGCGACTTCAAGTCGG
CGATCGACTTCGATCAAAGCGCGCTGTTCAAGAAGGTCTACGAGGAAGAGTTCGGCACCTTCGGCGGTGCGCCATTCGGC
GCACTGGTCGGCGACTACTACATCGGCCGCCAGCCGGAGGACATGTACTTCGTCGAGCAGATGTCGCATGTGGCCGCCGC
GGCGCACGCGCCCTTCATCTCTGCCGCGTCTGAATCGATGTTTGGTCTGGAAACCTTCACCGACCTGGGCAAACCGCGCG
ATCTGGCCAAGGTGTTCGACACTGTCGAATACGCCAAGTGGAAGTCGTTCCGTGAGTCGGAGGATAGCCGCTACGTCGGC
CTGACCATGCCGCGTTTTCTCGGGCGGCTGCCGTACAACCCGAAGGACGGCACTACGGTCGAAGGCTTCAACTTCGTCGA
AGACGTCGACGCTGCCGACCATAGCAAGTATCTGTGGTGCAACACCGCTTATGCGATGGCCACGCGCCTGACCAAGGCGT
TCGAGGACTACGGTTGGTGCGCGGCGATCCGCGGTGTGGAAGGCGGTGGCCTGGTCGAAGACCTGCCGACCCACACCTTC
CGCACCGACGACGGCGAAGTGGCGCTGAAGTGCCCGACCGAGATCGCGATCACCGACCGCCGCGAGAAGGAACTCAGCGA
CCTGGGCTTCATCCCGCTGGTACATTGCAAGAACACCGACTACGCGGCGTTCTTCGGTGCGCAGTCGGCGCAGAAGCCGA
AGAAGTACAACACCGATGCGGCCAATGCCAACGCGATCCTGTCGGCGCAGCTGCAGTACATGTTCGCCGTGTCGCGTATC
GCCCATTACCTCAAGGCGATGATGCGCGAGAAGATCGGCAGTTTCGCCTCGGCGCGTAATGTCGAGGACTTCCTGAACCG
TTGGATCTCCCAGTACGTGTTGTTGGACGACAACGCCGGTCAGGAAGCAAAGGCGCAATACCCCTTGCGGGAAGCGTCCG
TACAAGTTTCGGAAGTGCCGGGGAAACCCGGTGTCTACCGCGCGGTGGCCTTCATCAGGCCGCATTTCCAGCTCGATGAG
CTGTCTGTTTCGTTGCGTCTGGTGGCCGAACTGCCGGCTGGTACCAAGAAGGCGTAG