Detailed information of component protein


Summary

Component ID T6CP002890
Component protein type TssE
T6SS ID (Type) T6SS00287 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (163 a.a.); Nucleotide sequence (489 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PXO_RS17610
Coordinate (Strand) 3862470..3862958 (-)
NCBI ID WP_011259942.1
RefSeq NC_010717
Uniprot ID A0A7U4NBR3_9XANT, Q5GX39_XANOR, A0A5E8KUQ6_9XANT, A0A0K0GNI7_XANOP, G7TI22_XANOB
KEGG ID xoo:XOO3478, xor:XOC_1357, xop:PXO_02048
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 3.2e-20 33..133

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-162 MKGLEPSLLEKLFDDTPKSTGSSHVFKAISIDQYKESVARDLEGLLNTRSAFSEEGLTEFPNCKQSLLTYGLGDFSAMSLANGYDRTMICRSLEQAIARHERRLRNVHVTLETAGQFGGGLHFTIHALLDMEPAREPVSFDAMLQPSTLQYSVSRLRRQAAP



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9855 - -



  Protein sequence: 163 a.a.    

>T6CP002890 NC_010717:c3862958-3862470 [Xanthomonas oryzae pv. oryzae PXO99A] [TssE]
MKGLEPSLLEKLFDDTPKSTGSSHVFKAISIDQYKESVARDLEGLLNTRSAFSEEGLTEFPNCKQSLLTYGLGDFSAMSL
ANGYDRTMICRSLEQAIARHERRLRNVHVTLETAGQFGGGLHFTIHALLDMEPAREPVSFDAMLQPSTLQYSVSRLRRQA
AP*

  Nucleotide sequence: 489 bp    

>T6CP002890 NC_010717:c3862958-3862470 [Xanthomonas oryzae pv. oryzae PXO99A] [TssE]
ATGAAGGGACTCGAACCCAGTCTGTTGGAAAAATTGTTCGACGACACGCCCAAGTCCACGGGTAGCTCGCATGTGTTCAA
GGCCATCTCCATCGACCAATACAAGGAATCGGTCGCTCGCGACCTGGAAGGCCTATTGAACACCCGTTCGGCCTTCAGCG
AAGAAGGCCTCACCGAATTTCCCAATTGCAAGCAGTCGTTGCTGACCTACGGCCTCGGCGATTTTTCCGCGATGAGCCTG
GCCAATGGCTACGACCGCACGATGATCTGCCGCTCGCTGGAGCAGGCGATCGCGCGCCATGAGCGGCGCCTGCGCAACGT
GCACGTGACGCTGGAAACCGCCGGCCAGTTCGGCGGCGGCCTGCATTTCACCATCCATGCGTTGCTGGACATGGAGCCGG
CGCGCGAGCCGGTGAGCTTCGACGCCATGCTGCAACCGTCCACCCTGCAGTACTCGGTCAGCCGCCTGCGGCGCCAGGCA
GCGCCCTGA