Detailed information of component protein


Summary

Component ID T6CP002889
Component protein type TssF
T6SS ID (Type) T6SS00287 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (612 a.a.); Nucleotide sequence (1836 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS17605
Coordinate (Strand) 3860632..3862467 (-)
NCBI ID WP_011259941.1
RefSeq NC_010717
Uniprot ID Q5GX40_XANOR, A0A0K0GNB0_XANOP
KEGG ID xop:PXO_02049, xoo:XOO3477
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.4e-186 2..607
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-611 MQDLLPYYERELGYLRRYGREFAERYPKIAGRLQLSADGSQDPHVERLIEAFALMGARISKRIEDDYPEFTDALLEVLYPHYLRPFPSCSIAYFDMEGVAAKLSAPIRVPRGSYLLSRPVRGINCRFRTAYDVVLVPVAVKAASYRGVAEAPMAVSLPPGTGAQISISFELLSDQASFAGLGTDALRFFVDGEPSFCSAMRDALALGVKAAYVESDGSGRWRRLADTPLVPVGFADDESLIDFPARSHPAYRLLTELFGYPDKFGFFDLQLKPVTAGASRWFTLHLVLQATPPDRAANQVLEELDCKNIRLGCTPVVNLFAQHGEPIRVTHRSVTYPVIADGRRAFAYEVHSIDSVHRIRQTPQGELIQEFRPFYSLHHGEDPERAGQYWVARRDEDVARQSPGYETEVSFVDLEFNPTLPQTDVVSVELTCSNRDLPSQLAYGIAGGDLSIEGGTPARAISLLRKPSRPLRFRHGRGAQWRLISHLSLNQLSLTGSGLPALKEMLRLYDISGSSVSSRQIDGIVGIEQYPVTTWLSGKHFASVVRGLEVRLTISENHFVGTGVAAFAHVLDHFFGLYVHANSFIRLVLISSDTGEELVRCLPRSGESILA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9942 - -


  Protein sequence: 612 a.a.    

>T6CP002889 NC_010717:c3862467-3860632 [Xanthomonas oryzae pv. oryzae PXO99A] [TssF]
MQDLLPYYERELGYLRRYGREFAERYPKIAGRLQLSADGSQDPHVERLIEAFALMGARISKRIEDDYPEFTDALLEVLYP
HYLRPFPSCSIAYFDMEGVAAKLSAPIRVPRGSYLLSRPVRGINCRFRTAYDVVLVPVAVKAASYRGVAEAPMAVSLPPG
TGAQISISFELLSDQASFAGLGTDALRFFVDGEPSFCSAMRDALALGVKAAYVESDGSGRWRRLADTPLVPVGFADDESL
IDFPARSHPAYRLLTELFGYPDKFGFFDLQLKPVTAGASRWFTLHLVLQATPPDRAANQVLEELDCKNIRLGCTPVVNLF
AQHGEPIRVTHRSVTYPVIADGRRAFAYEVHSIDSVHRIRQTPQGELIQEFRPFYSLHHGEDPERAGQYWVARRDEDVAR
QSPGYETEVSFVDLEFNPTLPQTDVVSVELTCSNRDLPSQLAYGIAGGDLSIEGGTPARAISLLRKPSRPLRFRHGRGAQ
WRLISHLSLNQLSLTGSGLPALKEMLRLYDISGSSVSSRQIDGIVGIEQYPVTTWLSGKHFASVVRGLEVRLTISENHFV
GTGVAAFAHVLDHFFGLYVHANSFIRLVLISSDTGEELVRCLPRSGESILA*

  Nucleotide sequence: 1836 bp    

>T6CP002889 NC_010717:c3862467-3860632 [Xanthomonas oryzae pv. oryzae PXO99A] [TssF]
ATGCAAGACCTGCTTCCCTACTACGAACGCGAACTGGGCTATCTGCGTCGCTACGGGCGCGAGTTCGCCGAGCGCTATCC
CAAGATTGCCGGGCGCCTGCAGCTGTCGGCCGACGGCAGCCAGGATCCGCATGTCGAGCGCCTGATCGAGGCGTTCGCGC
TGATGGGCGCGCGCATCTCCAAGCGCATTGAGGACGACTACCCCGAGTTCACCGACGCGCTGCTGGAAGTGCTGTATCCG
CACTATCTGCGGCCGTTTCCGTCCTGCTCCATCGCCTATTTCGACATGGAAGGCGTGGCTGCCAAGCTCAGCGCGCCGAT
CCGCGTGCCGCGCGGCAGCTACTTGCTGTCGCGCCCGGTGCGCGGGATCAATTGCCGGTTCCGCACCGCCTACGACGTGG
TACTGGTGCCGGTGGCGGTGAAGGCCGCCAGCTACCGCGGCGTGGCCGAAGCGCCGATGGCGGTCAGCCTGCCGCCGGGC
ACCGGCGCACAGATCTCGATCAGCTTCGAGCTGTTGTCCGACCAGGCCTCGTTCGCTGGCCTGGGCACCGACGCGCTGCG
TTTCTTCGTCGACGGCGAGCCGTCGTTCTGCTCGGCGATGCGCGATGCGCTGGCGCTGGGGGTCAAGGCGGCCTATGTCG
AGTCCGACGGCAGCGGACGCTGGCGCCGGCTGGCGGACACCCCGCTGGTGCCAGTGGGATTCGCCGACGACGAATCGCTG
ATCGATTTCCCGGCGCGTTCGCACCCGGCCTACCGCCTGCTGACCGAGCTGTTCGGCTACCCGGACAAGTTCGGCTTCTT
CGATCTTCAGCTCAAGCCGGTGACCGCCGGCGCCAGCCGCTGGTTCACGTTGCACCTGGTCCTACAAGCGACGCCGCCCG
ATCGCGCCGCCAACCAAGTGCTCGAGGAGTTGGATTGCAAGAACATCCGCCTGGGCTGCACCCCGGTGGTGAACCTGTTC
GCGCAGCACGGCGAGCCGATCCGCGTCACCCATCGCAGCGTCACCTATCCGGTGATCGCCGACGGGCGCCGCGCCTTTGC
CTACGAAGTGCATTCGATCGATTCGGTACACCGTATCCGGCAGACTCCGCAGGGCGAGCTAATCCAGGAGTTCCGCCCGT
TCTATTCGCTGCACCATGGCGAAGACCCCGAGCGCGCCGGCCAGTATTGGGTGGCGCGGCGCGACGAGGATGTGGCGCGG
CAGAGTCCCGGTTACGAAACCGAAGTGAGCTTCGTGGACCTGGAATTCAATCCGACCCTGCCGCAGACCGATGTGGTCAG
CGTCGAACTCACCTGCAGCAATCGCGATTTGCCCAGCCAGCTCGCCTACGGCATCGCCGGCGGCGACCTGTCGATCGAGG
GCGGAACGCCGGCGCGCGCGATCAGCCTGTTGCGCAAGCCGAGCCGGCCACTGCGGTTCCGCCACGGACGCGGCGCGCAA
TGGCGGCTGATCTCGCACCTGTCGTTGAATCAGCTGTCGCTGACCGGCAGCGGCTTGCCGGCGTTGAAGGAGATGCTGCG
GCTGTACGACATCTCCGGCAGCAGCGTGTCGTCGCGGCAGATCGACGGCATCGTCGGCATCGAGCAGTATCCGGTCACCA
CCTGGCTGTCCGGCAAGCATTTCGCATCGGTGGTGCGCGGCCTGGAAGTGCGTTTGACCATCAGCGAAAACCATTTCGTC
GGGACCGGCGTGGCCGCGTTCGCGCATGTGCTCGACCACTTCTTCGGCCTCTACGTCCACGCCAACAGCTTTATCCGGCT
GGTGCTCATTTCCAGCGACACAGGGGAGGAACTCGTCCGATGCTTACCGCGAAGCGGCGAATCGATCCTGGCGTAG