Detailed information of component protein


Summary

Component ID T6CP002888
Component protein type TssG
T6SS ID (Type) T6SS00287 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (364 a.a.); Nucleotide sequence (1092 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS17600
Coordinate (Strand) 3859577..3860668 (-)
NCBI ID WP_012445670.1
RefSeq NC_010717
Uniprot ID A0A0K0GN53_XANOP
KEGG ID xop:PXO_02050
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.5e-91 19..343
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-363 MLTAKRRIDPGVALQLLAEPHRFQFFQAMRILERVFQRQGVKAGQALPTRVRFHNSLSLAFPATELDPVGQAYSQNGERLESDAALAFAIETESLGEVHLTPNFMGLLGTSGALPLHYTETLHERELYQRDRTPRAFLDMFSNRAVALHYAAWKKHRLALQYELDRRERFLPLVLSLLGMGMPGLRDRMVDGGGDVFDQAVAYYAGAIRQRPISAKLLQRVLADYFKVPVELEQFVGAWYKVPAQQATRLGQANATLGSSALAGDRVWQRDLRMRLRFGPLQREAFDQFLPGGSAAKALSKWLMLLTGGGLEYEVKLVLRAEDVRGSGVGEALGVRLGWDSYLCSRPQTQPRADTTYGLHTLQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9603 - -


  Protein sequence: 364 a.a.    

>T6CP002888 NC_010717:c3860668-3859577 [Xanthomonas oryzae pv. oryzae PXO99A] [TssG]
MLTAKRRIDPGVALQLLAEPHRFQFFQAMRILERVFQRQGVKAGQALPTRVRFHNSLSLAFPATELDPVGQAYSQNGERL
ESDAALAFAIETESLGEVHLTPNFMGLLGTSGALPLHYTETLHERELYQRDRTPRAFLDMFSNRAVALHYAAWKKHRLAL
QYELDRRERFLPLVLSLLGMGMPGLRDRMVDGGGDVFDQAVAYYAGAIRQRPISAKLLQRVLADYFKVPVELEQFVGAWY
KVPAQQATRLGQANATLGSSALAGDRVWQRDLRMRLRFGPLQREAFDQFLPGGSAAKALSKWLMLLTGGGLEYEVKLVLR
AEDVRGSGVGEALGVRLGWDSYLCSRPQTQPRADTTYGLHTLQ*

  Nucleotide sequence: 1092 bp    

>T6CP002888 NC_010717:c3860668-3859577 [Xanthomonas oryzae pv. oryzae PXO99A] [TssG]
ATGCTTACCGCGAAGCGGCGAATCGATCCTGGCGTAGCGCTGCAACTGCTGGCCGAGCCGCATCGCTTCCAGTTTTTCCA
GGCGATGCGGATTCTGGAGCGGGTGTTCCAGCGCCAGGGGGTCAAGGCCGGTCAGGCCCTGCCCACACGCGTACGTTTTC
ACAACTCGCTGTCGTTGGCGTTTCCGGCGACCGAGCTGGACCCCGTCGGCCAGGCCTATTCGCAGAACGGCGAGCGCCTG
GAAAGCGATGCGGCGCTGGCGTTCGCGATCGAGACCGAGAGCCTGGGCGAAGTGCATCTGACCCCGAACTTCATGGGGTT
GCTGGGCACCTCCGGCGCATTGCCGCTGCACTACACCGAGACCCTGCACGAACGCGAGCTGTACCAGCGCGACCGTACCC
CACGCGCGTTCCTGGACATGTTCTCCAACCGCGCGGTGGCGCTGCACTACGCCGCGTGGAAGAAGCACCGGCTGGCGCTG
CAGTATGAGCTGGACCGGCGCGAGCGCTTCCTGCCGCTGGTGCTGTCGCTGCTGGGCATGGGCATGCCGGGACTACGCGA
TCGCATGGTCGACGGCGGCGGCGACGTCTTCGACCAGGCGGTGGCGTACTACGCCGGCGCCATCCGCCAGCGGCCGATCT
CGGCCAAGCTGCTGCAGCGCGTGCTGGCCGACTACTTCAAGGTGCCGGTGGAGCTGGAGCAGTTCGTCGGCGCCTGGTAC
AAGGTGCCGGCGCAACAGGCCACGCGGCTGGGCCAGGCCAACGCCACTCTCGGGTCCAGTGCGCTGGCCGGCGACCGGGT
GTGGCAGCGCGACCTGCGCATGCGCCTGCGCTTCGGTCCGCTGCAGCGTGAGGCTTTCGACCAGTTCCTGCCCGGAGGCA
GCGCCGCGAAGGCCTTGTCGAAATGGCTGATGCTGCTCACCGGCGGCGGGCTGGAATACGAGGTCAAGCTGGTGCTGCGC
GCCGAGGACGTACGCGGCTCCGGCGTCGGCGAAGCACTGGGCGTACGCCTGGGCTGGGACAGCTACCTATGCTCGCGCCC
GCAGACCCAGCCGCGCGCCGACACCACCTACGGTCTGCATACCCTTCAATAG