Detailed information of component protein


Summary

Component ID T6CP002887
Component protein type TssH
T6SS ID (Type) T6SS00287 experimental (Type i4b)
Strain Xanthomonas oryzae pv. oryzae PXO99A
Replicon chromosome
Sequence Protein sequence (911 a.a.); Nucleotide sequence (2733 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PXO_RS17595
Coordinate (Strand) 3856759..3859491 (-)
NCBI ID WP_012445669.1
RefSeq NC_010717
Uniprot ID A0A0K0GN88_XANOP
KEGG ID xop:PXO_02051
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.8e-42 640..808
AAA_lid_9 PF17871.3 7.2e-27 380..474
AAA PF00004.31 3.3e-10 239..351
ClpB_D2-small PF10431.11 1.5e-09 815..891
Clp_N PF02861.22 1.6e-09 23..75
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-910 MSINLKTLISKLDDTCRQAAERAANLCMARGNYEVDLEHLFLALLEQPQSDFVLIARRCGISPETLERDLSEEVGRFKAGNTRTPVFSQHLPTLFEHAWLIASLDSETTRIRSGHLLLALLTEPDLSQLAYRGSKQFVKIKLDALKHDFARLTEGSQEAGQSLRFADAGQADVGGDPVDGLAGVPDGKGGLTKTPALDQFTTNLVQRARDAQIDPVIGRDGEIRQVIDILMRRRQNNPILTGEAGVGKTAVVEGLARRIAEKDVPDVLQGVELHVLDMGLLQAGASVKGEFENRLKNVIDEVKKSPHPIILFIDEAHTMIGAGGTAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSETLAAAMLRGMVPLMEKHFGIRVMDEAVTEAVRLSHRYISGRQLPDKAVSVLDTACAKVALGQSATPAIIEDTRKHLDRLAAELAALNRETSGGARHHDARVAELLQAQESARKVLADNQTRLVRERELAERIVALRAQLEAVPAAAEPAAVAAKPARGAAKQATAAASPQHAQLDALLAELGELQGETPMVPLQVDGGVVAEIVSAWTGVPLGRMVKDEIRTVRNLDSLLGERVIGQDHALAAIAQRVRTATAKLEDPNKPRGVFLFVGPSGVGKTETALALADILYGGERKLITINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGVMDDAEGREIDFRNTLIILTSNVGSSQIMQACLNKPAEEIPAADALAEALRPILMRSFKPAFLGRLKVVPYYPISDDVLAQIIALKLGRIRDRVATNHKAAFHWDQSLVEAVLARCTEVDSGARNVDHILNGTLLPEIAESVLAAMAEGGNINAIKVGAGKNGAFKYKLS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9967 - -


  Protein sequence: 911 a.a.    

>T6CP002887 NC_010717:c3859491-3856759 [Xanthomonas oryzae pv. oryzae PXO99A] [TssH]
MSINLKTLISKLDDTCRQAAERAANLCMARGNYEVDLEHLFLALLEQPQSDFVLIARRCGISPETLERDLSEEVGRFKAG
NTRTPVFSQHLPTLFEHAWLIASLDSETTRIRSGHLLLALLTEPDLSQLAYRGSKQFVKIKLDALKHDFARLTEGSQEAG
QSLRFADAGQADVGGDPVDGLAGVPDGKGGLTKTPALDQFTTNLVQRARDAQIDPVIGRDGEIRQVIDILMRRRQNNPIL
TGEAGVGKTAVVEGLARRIAEKDVPDVLQGVELHVLDMGLLQAGASVKGEFENRLKNVIDEVKKSPHPIILFIDEAHTMI
GAGGTAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSETLAAAMLRGMVPLMEKHFGIR
VMDEAVTEAVRLSHRYISGRQLPDKAVSVLDTACAKVALGQSATPAIIEDTRKHLDRLAAELAALNRETSGGARHHDARV
AELLQAQESARKVLADNQTRLVRERELAERIVALRAQLEAVPAAAEPAAVAAKPARGAAKQATAAASPQHAQLDALLAEL
GELQGETPMVPLQVDGGVVAEIVSAWTGVPLGRMVKDEIRTVRNLDSLLGERVIGQDHALAAIAQRVRTATAKLEDPNKP
RGVFLFVGPSGVGKTETALALADILYGGERKLITINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLD
EVEKAHPDVLEMFFQVFDKGVMDDAEGREIDFRNTLIILTSNVGSSQIMQACLNKPAEEIPAADALAEALRPILMRSFKP
AFLGRLKVVPYYPISDDVLAQIIALKLGRIRDRVATNHKAAFHWDQSLVEAVLARCTEVDSGARNVDHILNGTLLPEIAE
SVLAAMAEGGNINAIKVGAGKNGAFKYKLS*

  Nucleotide sequence: 2733 bp    

>T6CP002887 NC_010717:c3859491-3856759 [Xanthomonas oryzae pv. oryzae PXO99A] [TssH]
ATGAGCATCAATCTCAAGACCCTGATCAGCAAACTCGACGACACCTGCCGGCAGGCGGCCGAGCGCGCGGCCAATCTGTG
CATGGCGCGCGGCAACTACGAAGTCGACCTGGAACATCTGTTCCTGGCGCTGCTGGAGCAACCGCAAAGCGATTTCGTGC
TGATCGCGCGCCGCTGCGGCATTTCGCCGGAGACGCTGGAACGTGATCTCAGCGAGGAGGTCGGCCGCTTCAAGGCCGGC
AATACGCGCACGCCGGTATTTTCCCAGCACCTGCCCACGCTGTTCGAGCACGCCTGGCTGATCGCCTCGCTAGATTCGGA
AACCACGCGCATCCGCAGCGGTCATCTGCTGCTGGCGCTGCTGACCGAGCCAGACCTGTCGCAGCTGGCCTACCGCGGTT
CCAAGCAGTTCGTGAAGATCAAGCTCGACGCGCTCAAGCACGACTTCGCCCGCCTCACCGAAGGCTCGCAGGAAGCCGGG
CAAAGCCTGCGTTTCGCCGATGCCGGCCAGGCCGACGTCGGCGGCGACCCGGTCGATGGCCTCGCCGGCGTGCCGGACGG
CAAGGGCGGCCTGACCAAGACCCCGGCGCTGGACCAGTTCACCACCAACCTCGTCCAGCGCGCCCGTGATGCGCAGATCG
ACCCGGTGATCGGCCGCGACGGCGAGATCCGCCAGGTGATCGACATCCTGATGCGGCGGCGCCAGAACAATCCGATCCTC
ACCGGCGAAGCCGGCGTCGGCAAGACCGCGGTCGTCGAGGGGCTGGCCCGGCGCATCGCCGAGAAGGACGTGCCGGACGT
GTTGCAGGGGGTGGAACTGCATGTGCTGGACATGGGCTTGCTGCAGGCCGGCGCCAGCGTCAAGGGCGAGTTCGAGAACC
GGCTGAAGAACGTCATCGACGAGGTCAAGAAGAGCCCGCATCCGATCATCCTGTTCATCGACGAGGCGCACACGATGATC
GGTGCCGGCGGGACCGCCGGCCAGAACGACGCGGCGAACCTGCTCAAGCCGGCGCTGGCGCGCGGCGAGCTGCGCACCAT
CGCGGCCACCACCTGGAGCGAATACAAGAAGTACTTCGAGAAGGACGCGGCGCTGGCACGGCGCTTCCAGGTGGTCAAGG
TCGAGGAGCCGAGCGAGACGCTGGCTGCGGCGATGCTGCGCGGCATGGTGCCGCTGATGGAGAAGCACTTCGGCATCCGG
GTGATGGACGAGGCGGTCACCGAGGCGGTCCGCCTGTCGCACCGCTACATCAGCGGCCGCCAGCTGCCGGACAAGGCGGT
CAGCGTGCTCGATACCGCCTGCGCCAAGGTCGCGCTCGGGCAGAGCGCCACCCCGGCGATCATCGAAGACACGCGCAAGC
ACCTGGACCGGCTGGCCGCGGAGTTGGCCGCGTTGAACCGCGAGACGTCCGGCGGCGCCCGCCACCACGACGCGCGCGTG
GCCGAGCTACTGCAAGCGCAGGAAAGCGCACGCAAGGTGCTGGCCGACAACCAGACGCGGCTGGTGCGCGAGCGCGAACT
GGCCGAGCGCATCGTCGCCCTGCGCGCGCAGCTGGAAGCGGTGCCGGCGGCCGCCGAACCCGCGGCCGTCGCCGCCAAGC
CGGCACGCGGCGCGGCGAAGCAGGCCACCGCGGCGGCTTCGCCGCAGCACGCGCAGCTGGACGCGCTGCTCGCCGAGCTG
GGCGAGCTGCAGGGCGAAACCCCGATGGTGCCGCTGCAGGTCGACGGCGGCGTGGTCGCCGAGATCGTCTCGGCCTGGAC
CGGGGTGCCGCTGGGGCGCATGGTCAAGGACGAGATCCGCACCGTGCGCAACCTCGACAGCCTGCTGGGCGAGCGCGTCA
TCGGCCAGGACCATGCGCTGGCCGCGATCGCCCAGCGCGTGCGCACCGCCACCGCCAAGCTGGAAGACCCGAACAAGCCT
CGCGGCGTCTTCCTCTTCGTCGGCCCGTCCGGCGTCGGCAAGACCGAGACCGCGCTGGCGCTGGCCGACATCCTGTACGG
CGGCGAGCGCAAGCTGATCACCATCAACATGAGCGAGTACCAGGAAGCGCACAGCGTGTCCGGGTTGAAGGGCTCTCCGC
CTGGCTACGTCGGCTACGGCGAGGGCGGCGTGCTGACCGAGGCGGTGCGGCGCAACCCGTACAGTGTGGTGCTGCTGGAC
GAGGTGGAGAAAGCACACCCGGACGTGCTGGAGATGTTCTTCCAAGTGTTCGACAAGGGCGTGATGGACGATGCCGAAGG
CCGCGAGATCGACTTCCGCAACACCTTGATCATCCTCACGTCCAATGTCGGTTCCTCACAGATCATGCAGGCCTGCCTGA
ACAAGCCGGCCGAGGAGATTCCGGCCGCCGACGCATTGGCCGAGGCGTTGCGCCCGATCCTGATGCGCAGCTTCAAGCCG
GCCTTTCTCGGCCGGCTGAAGGTGGTGCCGTATTACCCGATCAGTGACGACGTGCTGGCGCAGATCATCGCGCTCAAGCT
CGGCCGCATCCGCGACCGCGTGGCCACCAACCACAAGGCCGCCTTCCACTGGGACCAGAGCCTGGTGGAGGCGGTGTTGG
CGCGCTGTACGGAAGTGGATTCGGGTGCGCGCAACGTCGACCACATTCTGAATGGCACGCTGTTGCCGGAAATCGCCGAG
AGCGTGCTCGCGGCGATGGCCGAAGGCGGCAACATCAACGCCATCAAGGTAGGCGCCGGCAAGAACGGCGCATTCAAATA
CAAGTTATCCTGA