Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PSPTO_RS28110 |
Coordinate (Strand) | 6176297..6176704 (-) |
NCBI ID | WP_011105491.1 |
RefSeq | NC_004578 |
Uniprot ID | A0A3M4KLD1_PSESF, A0A0W0PHD5_PSESF, A0A0N8RCT1_9PSED, Q87U77_PSESM, A0A0Q0B5V2_PSEUB, A0A3M2UXI1_PSEYM |
KEGG ID | pst:PSPTO_5431 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
GPW_gp25 | PF04965.16 | 8.7e-17 | 26..113 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-135 | MTGYGSLFERLNGDAEKRVSWSREVSATASVAAHLAKMLSTRAGSVQTLSDYGLPDLNDMRLSLHDSLTQARLAIESFIEAYEPRLSNVRVISLPRDHDQLRLSFSIEGLLEVEGFKRQVSFAARLDGSGQVKVN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.7666 | - | - |
Protein sequence: 136 a.a.
>T6CP000352 NC_004578:c6176704-6176297 [Pseudomonas syringae pv. tomato str. DC3000] [TssE]
MTGYGSLFERLNGDAEKRVSWSREVSATASVAAHLAKMLSTRAGSVQTLSDYGLPDLNDMRLSLHDSLTQARLAIESFIE
AYEPRLSNVRVISLPRDHDQLRLSFSIEGLLEVEGFKRQVSFAARLDGSGQVKVN*
MTGYGSLFERLNGDAEKRVSWSREVSATASVAAHLAKMLSTRAGSVQTLSDYGLPDLNDMRLSLHDSLTQARLAIESFIE
AYEPRLSNVRVISLPRDHDQLRLSFSIEGLLEVEGFKRQVSFAARLDGSGQVKVN*
Nucleotide sequence: 408 bp
>T6CP000352 NC_004578:c6176704-6176297 [Pseudomonas syringae pv. tomato str. DC3000] [TssE]
ATGACTGGATACGGCAGCCTTTTCGAACGCCTCAATGGCGATGCGGAAAAACGCGTCAGCTGGAGCCGCGAGGTTTCAGC
CACGGCCTCCGTGGCTGCCCATCTGGCCAAGATGCTCAGCACCCGTGCGGGCAGCGTGCAAACGCTGTCCGACTACGGGC
TACCCGATCTCAATGACATGCGCCTGAGCCTGCACGACTCGCTGACTCAGGCCCGTTTGGCCATCGAAAGCTTCATCGAA
GCCTACGAGCCGCGCTTGAGCAATGTGCGTGTCATTTCCCTGCCGCGTGATCACGATCAGCTTCGCCTGTCCTTCAGCAT
TGAAGGCCTGCTGGAAGTCGAGGGTTTCAAGCGTCAGGTCAGTTTCGCCGCTCGCCTGGATGGTAGCGGTCAAGTGAAGG
TTAATTAA
ATGACTGGATACGGCAGCCTTTTCGAACGCCTCAATGGCGATGCGGAAAAACGCGTCAGCTGGAGCCGCGAGGTTTCAGC
CACGGCCTCCGTGGCTGCCCATCTGGCCAAGATGCTCAGCACCCGTGCGGGCAGCGTGCAAACGCTGTCCGACTACGGGC
TACCCGATCTCAATGACATGCGCCTGAGCCTGCACGACTCGCTGACTCAGGCCCGTTTGGCCATCGAAAGCTTCATCGAA
GCCTACGAGCCGCGCTTGAGCAATGTGCGTGTCATTTCCCTGCCGCGTGATCACGATCAGCTTCGCCTGTCCTTCAGCAT
TGAAGGCCTGCTGGAAGTCGAGGGTTTCAAGCGTCAGGTCAGTTTCGCCGCTCGCCTGGATGGTAGCGGTCAAGTGAAGG
TTAATTAA