Detailed information of component protein


Summary

Component ID T6CP000112
Component protein type TssK
T6SS ID (Type) T6SS00015 experimental (Type i1)
Strain Pseudomonas putida KT2440
Replicon chromosome
Sequence Protein sequence (446 a.a.); Nucleotide sequence (1338 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PP_RS21185
Coordinate (Strand) 4608175..4609512 (+)
NCBI ID WP_003251351.1
RefSeq NC_002947
Uniprot ID A0A173HIG3_9PSED, Q88FL0_PSEPK, A0A2J7YJX3_PSEPU, A0A2V4FQI8_9PSED
KEGG ID ppu:PP_4080
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 6e-147 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-445 MSSRNPVLWPEGLFVKPQHFQQAARASEAALHQRLGSLNAAFYGFSELQLSTEYLSLGKVAITKARGIMPDGTVFDIPADLPPPPPLEIEDDGSKDSEIFLCLPLRTEGGREVSWPDNAANFRYNAQAEEIKDTHSADGDLVQVDLAVPNLQLKRKADDSSAYTRLAVARILERRPDGSLQLDETFYPTSVSVRAVPALQRFLEEITNTLRERARNLAARIGASGQSGIADIRDFNLLQAMNRWWPCFNHLARQGQTHPEQLYLSMSQACGEFVTFTDENRLPQEYPAYHHTALRTSFKPLEDTLRRALSTVLQPRAVSLPLETLDFGVMTTTLEDRRLIDEADFIIAVRADLPPQTLRQMFIQKAKVTSLESLNDLVPLQLPGIPLLPLPVAPRDLPFHAGFSYFELDRRDPAWACMKTANGFGFHVAGEFPGLELQFWAIRGE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9611 - -


  Protein sequence: 446 a.a.    

>T6CP000112 NC_002947:4608175-4609512 [Pseudomonas putida KT2440] [TssK]
MSSRNPVLWPEGLFVKPQHFQQAARASEAALHQRLGSLNAAFYGFSELQLSTEYLSLGKVAITKARGIMPDGTVFDIPAD
LPPPPPLEIEDDGSKDSEIFLCLPLRTEGGREVSWPDNAANFRYNAQAEEIKDTHSADGDLVQVDLAVPNLQLKRKADDS
SAYTRLAVARILERRPDGSLQLDETFYPTSVSVRAVPALQRFLEEITNTLRERARNLAARIGASGQSGIADIRDFNLLQA
MNRWWPCFNHLARQGQTHPEQLYLSMSQACGEFVTFTDENRLPQEYPAYHHTALRTSFKPLEDTLRRALSTVLQPRAVSL
PLETLDFGVMTTTLEDRRLIDEADFIIAVRADLPPQTLRQMFIQKAKVTSLESLNDLVPLQLPGIPLLPLPVAPRDLPFH
AGFSYFELDRRDPAWACMKTANGFGFHVAGEFPGLELQFWAIRGE*

  Nucleotide sequence: 1338 bp    

>T6CP000112 NC_002947:4608175-4609512 [Pseudomonas putida KT2440] [TssK]
ATGAGTTCACGTAACCCCGTTCTGTGGCCCGAAGGCCTGTTCGTCAAACCACAACATTTCCAACAAGCTGCGCGGGCCAG
TGAAGCGGCCTTGCATCAACGCCTTGGCAGCCTCAACGCGGCCTTCTACGGCTTCAGCGAACTGCAGCTAAGCACCGAAT
ACCTGAGCCTGGGCAAGGTCGCCATCACCAAGGCGCGCGGCATCATGCCCGATGGCACGGTGTTCGATATTCCTGCCGAT
CTGCCGCCGCCGCCGCCCCTGGAAATCGAGGACGACGGTTCGAAAGACAGCGAGATATTCCTGTGCTTGCCGCTGCGTAC
CGAGGGGGGCCGTGAAGTCAGCTGGCCCGACAATGCCGCCAACTTCCGCTACAACGCTCAGGCAGAGGAGATCAAGGATA
CCCACAGCGCCGACGGTGACCTGGTGCAGGTCGACCTGGCCGTGCCCAACCTGCAGCTCAAACGCAAAGCCGATGACAGC
AGTGCCTACACCCGCCTGGCCGTGGCTCGTATCCTGGAGCGGCGCCCTGACGGTAGCCTGCAGTTGGATGAAACGTTCTA
CCCCACCAGCGTTTCGGTGCGGGCAGTGCCGGCCCTTCAGCGGTTTCTTGAAGAAATCACCAACACCCTGCGCGAGCGTG
CGCGCAATCTTGCCGCCCGCATTGGCGCTTCGGGCCAGTCGGGTATCGCCGACATCCGCGACTTCAACCTGCTGCAGGCC
ATGAACCGCTGGTGGCCGTGCTTCAACCACCTGGCCCGGCAAGGACAAACACACCCCGAGCAGTTGTACCTGTCCATGAG
CCAGGCGTGTGGCGAATTCGTCACCTTCACCGACGAGAACCGGCTGCCGCAGGAATACCCGGCCTACCACCACACCGCAC
TGCGTACCTCGTTCAAGCCCCTGGAGGATACGCTCCGTCGAGCCCTGAGCACGGTCCTGCAACCCCGCGCCGTGTCACTG
CCGCTGGAGACCCTGGACTTTGGTGTGATGACGACCACGCTGGAAGACCGGCGCCTGATTGACGAAGCCGATTTCATCAT
CGCCGTGCGCGCCGACCTGCCGCCGCAGACGTTGCGCCAGATGTTCATCCAGAAAGCCAAGGTCACCTCACTCGAATCCT
TGAATGACCTGGTGCCTTTGCAACTGCCGGGCATCCCGCTGCTGCCCCTGCCGGTTGCACCACGCGACCTGCCCTTCCAT
GCGGGCTTCAGCTACTTCGAACTGGACCGCCGTGACCCCGCCTGGGCCTGCATGAAGACGGCCAACGGCTTCGGCTTCCA
CGTTGCAGGTGAGTTCCCAGGGCTTGAACTGCAGTTCTGGGCGATCAGGGGTGAATGA