Detailed information of component protein


Summary

Component ID T6CP000103
Component protein type TssE
T6SS ID (Type) T6SS00014 experimental (Type i4b)
Strain Pseudomonas putida KT2440
Replicon chromosome
Sequence Protein sequence (161 a.a.); Nucleotide sequence (483 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PP_RS16045
Coordinate (Strand) 3494202..3494684 (-)
NCBI ID WP_003248355.1
RefSeq NC_002947
Uniprot ID I7C954_PSEPT, A0A2I0CH93_9PSED, A0A173HF49_9PSED, Q88IA1_PSEPK, A0A2L0SYT8_9PSED, I3V3X4_PSEPU, A0A1X1AEM3_PSEPU, A5W3P8_PSEP1, A0A2V4FJ58_9PSED, A0A2N1IWE5_9PSED
KEGG ID ppf:Pput_2624, ppu:PP_3098, ppi:YSA_10467, ppx:T1E_2457
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 8.9e-14 36..135

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-160 MSNQARLLPSLLDRLLDDRPYQSAEPAAQRTCSLAEYKASIVRDLEVLVNTRQSLVAEELDGFSQLGGSILEYGMPDFISRSVLDPHDRRLIQQQLERAISTGDRRFRRVRVQLLAQQNGHRMLTFRVDAVLRLQDISRQVSFDAVLQVNTQEYKVQNLN



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9937 - -



  Protein sequence: 161 a.a.    

>T6CP000103 NC_002947:c3494684-3494202 [Pseudomonas putida KT2440] [TssE]
MSNQARLLPSLLDRLLDDRPYQSAEPAAQRTCSLAEYKASIVRDLEVLVNTRQSLVAEELDGFSQLGGSILEYGMPDFIS
RSVLDPHDRRLIQQQLERAISTGDRRFRRVRVQLLAQQNGHRMLTFRVDAVLRLQDISRQVSFDAVLQVNTQEYKVQNLN
*

  Nucleotide sequence: 483 bp    

>T6CP000103 NC_002947:c3494684-3494202 [Pseudomonas putida KT2440] [TssE]
ATGAGTAACCAGGCCCGCCTGCTGCCCTCGCTGCTCGACCGACTGCTGGACGATCGTCCCTACCAGTCGGCCGAGCCCGC
AGCGCAGCGCACCTGCTCGCTGGCCGAGTACAAGGCCAGCATCGTCCGCGACCTCGAAGTCCTGGTGAACACCCGCCAGT
CCCTGGTCGCCGAAGAGCTCGACGGTTTCAGCCAGCTCGGTGGTTCCATCCTTGAATACGGCATGCCGGACTTCATCAGC
CGCAGCGTGCTCGACCCGCACGATCGTCGCCTGATCCAGCAACAGCTGGAGCGGGCGATCAGCACCGGAGACCGGCGCTT
TCGCCGGGTCCGTGTTCAGCTGTTGGCCCAGCAGAACGGCCACCGCATGTTGACCTTCCGCGTGGACGCCGTGTTGCGTC
TGCAGGACATCAGCCGCCAGGTGTCATTCGACGCCGTGCTGCAGGTCAACACCCAGGAATACAAAGTGCAGAACCTCAAC
TGA