Detailed information of component protein


Summary

Component ID T6CP000102
Component protein type TssF
T6SS ID (Type) T6SS00014 experimental (Type i4b)
Strain Pseudomonas putida KT2440
Replicon chromosome
Sequence Protein sequence (607 a.a.); Nucleotide sequence (1821 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PP_RS16040
Coordinate (Strand) 3492382..3494202 (-)
NCBI ID WP_010953993.1
RefSeq NC_002947
Uniprot ID A0A2V4FG99_9PSED, Q88IA2_PSEPK
KEGG ID ppu:PP_3097
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.5e-216 1..603

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-606 MLDELLPYYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLYPHYLRPTPSMSIVELSLGRHEKVTEAYRVARHTEMHANPVEGVVCKFRTCYPVELWPIAVQQASFTEMERSAFNGHSADLVARLRIRLAATGDALFGQMDMNRLRFFLDGEATLMLQLYELLFNNLAKATLSFDDQGRSREVALPADALKTVGYARDEGLVDYSERSFLGYRLLHEYFTFPDKFMFFDLSGFARILQGKAIEQVEVNFYFSDYDLSERLARLTQNIGRNNFKLNCTPIINLFRQQAEPIKLTHTQHEYQVTPDTRLHNAAEVVSIDRVRRVRKLGGIDQVATCQPFFEPRGEQDPHSSFWVARRRNQGDATAMSIRVVDRDLELIDASSDTLSIGLTCSNRDVPLMLPFGGERGDFTIPANSVIKDIRCLRKPTATVRVPLGKGLIWRLIAHLSLNHLSLVSQGREVLLELLSLYNYRNVSAIRKQINGIKAISSEPVVARIGHPRPNFVRGVGITLTLDESQFIGSGVFLFGRVLDHFFGQYCSMNSFTQLTLRTQQREKRVVQWPARTGDQPLV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9957 - -



  Protein sequence: 607 a.a.    

>T6CP000102 NC_002947:c3494202-3492382 [Pseudomonas putida KT2440] [TssF]
MLDELLPYYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLY
PHYLRPTPSMSIVELSLGRHEKVTEAYRVARHTEMHANPVEGVVCKFRTCYPVELWPIAVQQASFTEMERSAFNGHSADL
VARLRIRLAATGDALFGQMDMNRLRFFLDGEATLMLQLYELLFNNLAKATLSFDDQGRSREVALPADALKTVGYARDEGL
VDYSERSFLGYRLLHEYFTFPDKFMFFDLSGFARILQGKAIEQVEVNFYFSDYDLSERLARLTQNIGRNNFKLNCTPIIN
LFRQQAEPIKLTHTQHEYQVTPDTRLHNAAEVVSIDRVRRVRKLGGIDQVATCQPFFEPRGEQDPHSSFWVARRRNQGDA
TAMSIRVVDRDLELIDASSDTLSIGLTCSNRDVPLMLPFGGERGDFTIPANSVIKDIRCLRKPTATVRVPLGKGLIWRLI
AHLSLNHLSLVSQGREVLLELLSLYNYRNVSAIRKQINGIKAISSEPVVARIGHPRPNFVRGVGITLTLDESQFIGSGVF
LFGRVLDHFFGQYCSMNSFTQLTLRTQQREKRVVQWPARTGDQPLV*

  Nucleotide sequence: 1821 bp    

>T6CP000102 NC_002947:c3494202-3492382 [Pseudomonas putida KT2440] [TssF]
ATGCTCGACGAACTGCTGCCCTACTACGAAAAGGAACTGTCGCACCTGCGCTTTCTCGGCCAAGAGTTTGCTGCGCAGTA
CCCGAAGATCGCTTCGCGGTTGCTGATCGAGGGCGACAACTGCGAAGACCCGCACACCGAGCGCCTGATCGAGGCGTTCT
CGTTCCTGTCTGCGCGGGTGCACAAGAAGCTCGATGACGAGTTTCCGGAAATCGTCGAATCCTTCCTCGAGGTACTGTAC
CCCCACTACCTGCGCCCTACTCCGTCGATGTCGATTGTCGAACTGAGCCTGGGCAGGCACGAAAAAGTCACCGAAGCCTA
CCGCGTCGCGCGCCATACCGAGATGCATGCCAATCCCGTGGAAGGCGTGGTGTGCAAGTTCCGCACCTGCTACCCGGTAG
AGCTGTGGCCGATTGCCGTGCAGCAGGCCTCGTTCACAGAAATGGAACGCTCGGCCTTCAACGGGCACAGCGCCGACCTG
GTCGCTCGTCTGCGCATCCGCCTGGCAGCCACTGGCGATGCCCTGTTCGGGCAGATGGACATGAACCGCCTGCGGTTCTT
CCTCGACGGCGAAGCGACCCTGATGCTGCAGCTGTACGAACTGCTGTTCAACAACCTCGCCAAGGCCACGCTGAGCTTCG
ACGACCAGGGCCGCAGCCGCGAGGTGGCGCTGCCGGCCGATGCCCTGAAAACCGTGGGCTATGCCCGTGACGAAGGCCTG
GTGGATTACTCCGAACGCTCATTCCTGGGCTACCGCCTGCTGCACGAGTATTTCACCTTCCCTGACAAGTTCATGTTCTT
CGACCTCAGTGGATTTGCCCGCATCCTGCAGGGCAAGGCCATCGAGCAGGTAGAGGTCAACTTCTATTTCTCCGACTACG
ACCTCAGCGAGCGCCTGGCGCGGCTGACCCAGAACATCGGGCGCAACAACTTCAAGCTCAACTGCACGCCGATCATCAAC
CTGTTCCGCCAGCAGGCCGAGCCAATCAAGCTGACCCACACCCAGCACGAATACCAGGTCACCCCTGACACACGGCTGCA
CAACGCTGCAGAAGTGGTATCGATCGACCGGGTACGGCGGGTGCGCAAACTCGGCGGTATCGACCAGGTCGCCACCTGCC
AGCCGTTTTTCGAACCCCGGGGCGAGCAAGACCCACACAGCAGCTTCTGGGTTGCGCGCCGGCGAAACCAGGGTGACGCC
ACTGCCATGAGCATCCGCGTGGTCGACCGCGATCTGGAACTGATCGACGCCAGCAGCGACACCCTCAGTATCGGCCTTAC
CTGCAGCAACCGCGACGTGCCGCTGATGCTGCCGTTCGGTGGCGAACGGGGCGATTTCACCATTCCCGCCAACTCGGTGA
TCAAGGATATCCGCTGCCTGCGCAAGCCCACCGCCACGGTGCGTGTGCCCTTGGGCAAGGGCCTGATCTGGCGGTTGATC
GCCCACCTGTCGCTGAACCATCTGTCGCTGGTCAGCCAGGGCCGCGAAGTGCTGCTGGAGCTGTTGTCGCTGTACAACTA
CCGCAATGTCTCCGCCATTCGCAAACAGATCAACGGCATCAAGGCGATCAGCAGCGAGCCGGTGGTCGCGCGCATCGGCC
ACCCGCGGCCAAATTTCGTGCGCGGCGTCGGCATCACCCTGACCCTGGACGAAAGCCAGTTCATCGGCAGCGGCGTGTTT
CTGTTCGGCAGGGTGCTGGACCACTTCTTCGGCCAGTACTGCTCGATGAACAGTTTCACCCAACTGACCCTGCGCACCCA
ACAACGAGAAAAGAGAGTCGTACAATGGCCAGCACGCACCGGCGATCAGCCCCTGGTCTGA