Detailed information of component protein


Summary

Component ID T6CP000100
Component protein type TssH
T6SS ID (Type) T6SS00014 experimental (Type i4b)
Strain Pseudomonas putida KT2440
Replicon chromosome
Sequence Protein sequence (866 a.a.); Nucleotide sequence (2598 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PP_RS16030
Coordinate (Strand) 3488754..3491351 (-)
NCBI ID WP_049586082.1
RefSeq NC_002947
Uniprot ID A0A2V4FCD7_9PSED
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.9e-42 596..763
AAA_lid_9 PF17871.3 1.8e-28 365..465
ClpB_D2-small PF10431.11 8.2e-13 772..843
AAA PF00004.31 1.2e-08 225..337
Clp_N PF02861.22 2.1e-06 21..73
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-865 VNLKSLFAKLNETSRTATESAAALCLSEHHYEVEVEHLLLQLLDNNDSDLAPILRHYQVVAERLQAQLVTALGTFKKGNTRTPALSPHITRMIEQAWLLASIEYGVGQVRSAHLLQALLDDAELRRVVIASAPELEKINADDLRLNLAALVEGSAESRQASPLASPAAPVSTSSKASGKTPALDQYTVNLTQSAREGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEGLALRIAQGDVPAVLKDVALHTLDLGLLQAGAGVKGEFENRLKAVIEEVKRSLHPIILFIDEAHTLIGSGGQAGQNDAANLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLGKMREHHKVAVMDEALVQAVRLSNRYITGRQLPDKAVSVLDTACARIALAQSSLPGALEDCRRQIDNLQAEIDVLGHEAGKGHDHARRLESLQAALQAEQQQEQQLNAQWQQELELVEQLKALDAANDADAQQLNTLRAELARVQGDQPLVHALVDSGAIAQVISGWTGIPLGKMLRDEIDTVQRLPALLGERVLGQDHALHEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNLITINMSEYQEAHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTSNTGTERIMQTCLNATELPTPEAIVEDLRDQLNHVFKPAFLGRLSIVPFYPVQDQILERIVALKLERIAKRFARNHQAELSYDQALVKAIAARCTEVDSGARNIDNILSQTLMPELAQRVLERMAQDAPIQHLAIELGSDGDFAYRLA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9914 - -


  Protein sequence: 866 a.a.    

>T6CP000100 NC_002947:c3491351-3488754 [Pseudomonas putida KT2440] [TssH]
VNLKSLFAKLNETSRTATESAAALCLSEHHYEVEVEHLLLQLLDNNDSDLAPILRHYQVVAERLQAQLVTALGTFKKGNT
RTPALSPHITRMIEQAWLLASIEYGVGQVRSAHLLQALLDDAELRRVVIASAPELEKINADDLRLNLAALVEGSAESRQA
SPLASPAAPVSTSSKASGKTPALDQYTVNLTQSAREGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG
LALRIAQGDVPAVLKDVALHTLDLGLLQAGAGVKGEFENRLKAVIEEVKRSLHPIILFIDEAHTLIGSGGQAGQNDAANL
LKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLGKMREHHKVAVMDEALVQAVRLSN
RYITGRQLPDKAVSVLDTACARIALAQSSLPGALEDCRRQIDNLQAEIDVLGHEAGKGHDHARRLESLQAALQAEQQQEQ
QLNAQWQQELELVEQLKALDAANDADAQQLNTLRAELARVQGDQPLVHALVDSGAIAQVISGWTGIPLGKMLRDEIDTVQ
RLPALLGERVLGQDHALHEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNLITINMSEYQEA
HTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTSNT
GTERIMQTCLNATELPTPEAIVEDLRDQLNHVFKPAFLGRLSIVPFYPVQDQILERIVALKLERIAKRFARNHQAELSYD
QALVKAIAARCTEVDSGARNIDNILSQTLMPELAQRVLERMAQDAPIQHLAIELGSDGDFAYRLA*

  Nucleotide sequence: 2598 bp    

>T6CP000100 NC_002947:c3491351-3488754 [Pseudomonas putida KT2440] [TssH]
GTGAACCTGAAGTCTCTGTTCGCCAAGCTCAACGAAACCAGCCGCACGGCCACCGAAAGCGCGGCGGCCCTGTGCCTGTC
GGAGCACCATTACGAGGTGGAAGTGGAGCACCTGCTGCTGCAGTTGCTCGACAACAACGACAGCGACCTGGCGCCGATCC
TGCGCCACTACCAGGTCGTCGCCGAACGCCTGCAAGCGCAGCTGGTCACCGCCCTGGGCACCTTCAAGAAAGGTAATACC
CGCACCCCGGCGCTGTCGCCGCACATTACCCGCATGATCGAGCAAGCCTGGTTGCTGGCCTCGATCGAATACGGCGTAGG
CCAGGTGCGCAGCGCTCACCTGCTGCAGGCTCTGCTTGACGATGCTGAACTGCGTCGCGTGGTGATCGCCTCGGCACCGG
AGCTGGAAAAAATCAACGCCGATGACCTGCGCCTGAACCTTGCCGCGCTGGTGGAGGGTAGCGCCGAGTCCAGGCAGGCC
AGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCGGCGCTGGACCAGTACAC
GGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCGTGAGTTCGAAGTACGGCAGATGGTCG
ACATCCTCACCCGCCGCCGGCAGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGC
CTGGCGCTGCGCATCGCCCAGGGTGACGTGCCGGCGGTGCTCAAGGACGTTGCCCTGCACACCCTCGACCTGGGCCTGTT
ACAGGCCGGCGCCGGGGTCAAGGGCGAGTTCGAGAACCGCCTCAAGGCTGTGATCGAAGAGGTCAAGCGCAGCCTGCACC
CGATCATCCTGTTCATCGACGAAGCCCACACCCTGATCGGCTCCGGCGGCCAGGCCGGGCAGAACGATGCCGCCAACCTG
CTCAAGCCGGCCCTGGCCCGTGGCGAGTTGCGCACCATCGCTGCCACTACCTGGGCCGAATACAAGAAGTACTTCGAGAA
GGACGCCGCCCTCGCCCGCCGCTTCCAGGTGGTCAAAGTGGAAGAGCCCGACGAAGACAAGGCCATTCACATGCTGCGCG
GCCTGCTCGGCAAGATGCGCGAGCACCACAAGGTGGCGGTGATGGACGAAGCGCTGGTGCAGGCGGTACGCCTGTCCAAC
CGCTACATCACCGGCCGCCAGCTGCCCGACAAGGCGGTCAGCGTGCTCGACACGGCCTGCGCGCGCATTGCCCTGGCGCA
ATCTTCGCTGCCCGGCGCACTGGAAGACTGCCGCCGGCAGATCGACAACCTGCAGGCGGAAATCGACGTGCTCGGCCACG
AAGCCGGCAAGGGGCACGACCATGCCCGCCGCCTGGAATCGCTGCAGGCTGCCCTGCAGGCCGAGCAGCAGCAGGAACAG
CAGCTCAATGCCCAGTGGCAGCAGGAGCTGGAACTGGTCGAACAGCTCAAGGCGCTGGACGCCGCCAACGATGCCGACGC
CCAGCAGCTCAATACCCTGCGTGCCGAGCTGGCGCGCGTGCAAGGCGACCAGCCACTGGTCCACGCGCTGGTCGACAGCG
GCGCCATCGCCCAGGTCATCAGTGGCTGGACCGGCATCCCGCTGGGCAAGATGCTGCGTGACGAAATCGATACCGTGCAG
CGCCTGCCGGCCCTGCTTGGTGAGCGCGTGCTGGGCCAGGACCACGCCCTGCATGAGATCGGCAAGCGCATCAAGATTTC
CCGAGCGCGCATGGAAGACCCGAACAAACCGATTGGCGTGTTCCTGCTGCTCGGCCCCAGCGGCGTCGGCAAGACCGAAA
CCGCCCTGGCCCTGGCCGACACCTTGTACGGCGGCGAGCGCAACCTGATCACCATCAACATGTCCGAGTACCAGGAAGCC
CACACCGTGTCGAGCCTCAAGGGCTCGCCACCCGGCTATGTCGGCTACGGCGAAGGCGGCGTACTGACCGAGGCGGTGCG
CCGCAAGCCGTACAGCGTGGTGTTGCTCGACGAGGTGGAAAAAGCCCACCCCGACGTGCTCGAACTGTTCTTCCAGGTGT
TCGACAAGGGCGTGCTGGACGATGGCGAAGGCCGCGAGATCAACTTCCGCAACACGGTGATCATCCTCACCTCCAACACC
GGCACCGAGCGCATCATGCAGACCTGCCTGAACGCCACCGAGCTGCCGACGCCCGAGGCGATCGTCGAAGACCTGCGCGA
CCAGCTCAACCATGTGTTCAAGCCGGCCTTCCTCGGTCGCCTGAGCATCGTGCCGTTCTACCCGGTGCAGGACCAGATCC
TCGAGCGCATCGTCGCCCTCAAGCTCGAACGCATCGCCAAGCGCTTCGCCCGCAACCACCAGGCCGAGCTCAGCTATGAC
CAGGCGCTGGTCAAGGCCATCGCCGCGCGCTGCACCGAGGTCGACAGCGGCGCACGCAACATCGACAACATCCTGTCCCA
GACCCTGATGCCCGAACTCGCCCAGCGCGTGCTCGAGCGCATGGCCCAGGACGCGCCGATCCAGCACCTTGCGATCGAGC
TGGGCAGCGATGGCGATTTCGCCTATCGCCTGGCCTGA