Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU26_RS16510 Genome accession   NZ_CP155935
Coordinates   3770236..3771294 (-) Length   352 a.a.
NCBI ID   WP_014508817.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain Xcr-TH1B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3765236..3776294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU26_RS16490 (ABFU26_16445) - 3766299..3768245 (-) 1947 WP_407459920.1 type IV pilus secretin PilQ -
  ABFU26_RS16495 (ABFU26_16450) - 3768265..3768798 (-) 534 WP_011038332.1 pilus assembly protein PilP -
  ABFU26_RS16500 (ABFU26_16455) - 3768795..3769460 (-) 666 WP_011038333.1 type 4a pilus biogenesis protein PilO -
  ABFU26_RS16505 (ABFU26_16460) - 3769457..3770236 (-) 780 WP_014508816.1 PilN domain-containing protein -
  ABFU26_RS16510 (ABFU26_16465) comM 3770236..3771294 (-) 1059 WP_014508817.1 pilus assembly protein PilM Machinery gene
  ABFU26_RS16515 (ABFU26_16470) - 3771510..3773936 (+) 2427 WP_019237291.1 penicillin-binding protein 1A -
  ABFU26_RS16525 (ABFU26_16480) - 3774517..3775167 (+) 651 WP_042597625.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37638.27 Da        Isoelectric Point: 4.3924

>NTDB_id=999909 ABFU26_RS16510 WP_014508817.1 3770236..3771294(-) (comM) [Xanthomonas campestris pv. raphani strain Xcr-TH1B]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGMTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=999909 ABFU26_RS16510 WP_014508817.1 3770236..3771294(-) (comM) [Xanthomonas campestris pv. raphani strain Xcr-TH1B]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
ACGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAACCGTTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCTGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGTTGGCGGCGTCGCGTTCGGAGAACGTCGAGCTGCGCCAATCGGCGTTGGAGCTCGGT
GGGCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTTGCCCTGGTTGCCAGCGAATTGCCGGT
CGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGTTGAGCGTGCTGCGCTCAGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTCATGCGCCGCTACGGCATGACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GCTGCGCCGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAACAGCTGGGCGTGACTACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment