Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   EL079_RS04740 Genome accession   NZ_LR134283
Coordinates   978586..979947 (+) Length   453 a.a.
NCBI ID   WP_003030685.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC10713     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 973586..984947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS04715 (NCTC10713_00986) - 973779..974837 (-) 1059 WP_018543436.1 serine hydrolase -
  EL079_RS04720 (NCTC10713_00987) - 975052..975381 (-) 330 WP_003030698.1 hypothetical protein -
  EL079_RS04725 (NCTC10713_00988) - 975433..975684 (-) 252 WP_018543435.1 hypothetical protein -
  EL079_RS04730 (NCTC10713_00989) - 975866..976150 (-) 285 WP_003030694.1 bacteriocin immunity protein -
  EL079_RS04735 (NCTC10713_00990) comA/nlmT 976398..978575 (+) 2178 WP_003030689.1 peptide cleavage/export ABC transporter Regulator
  EL079_RS04740 (NCTC10713_00991) comB 978586..979947 (+) 1362 WP_003030685.1 bacteriocin secretion accessory protein Regulator
  EL079_RS04745 (NCTC10713_00992) - 980222..980827 (-) 606 WP_003025442.1 superoxide dismutase -
  EL079_RS04750 (NCTC10713_00993) holA 980898..981935 (-) 1038 WP_003030703.1 DNA polymerase III subunit delta -
  EL079_RS04755 (NCTC10713_00994) cvfB 982017..982871 (-) 855 WP_003030696.1 RNA-binding virulence regulatory protein CvfB -
  EL079_RS04760 (NCTC10713_00995) frr 983223..983780 (-) 558 WP_003030687.1 ribosome recycling factor -
  EL079_RS04765 (NCTC10713_00996) pyrH 983784..984524 (-) 741 WP_003025453.1 UMP kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50923.77 Da        Isoelectric Point: 9.5525

>NTDB_id=999910 EL079_RS04740 WP_003030685.1 978586..979947(+) (comB) [Streptococcus anginosus strain NCTC10713]
MNPNLFKSAEFYHRRYHNFATVLILPLVFFVLFLVLFSFIGQKEVTVKSIGEITPTKVIAMIQSTSDNTVLTNHLAENKT
VTKGELLVQYTKNMEASQQTAIETQLATYQRQKAELETLKNSLQQGTNLFTDKDEFGYANTFNNFIKQSEDLTIGISKNN
SEVSKQASLTNHTIAAIDEQMNELTKQMNDYHELYNAISSNVSNLPKSNPHQATFNLYKNEYHVKHDSSTTNQYLAQIDT
KISSLNSSIANLKIQKASAGTATTYDNSLSTKIEVLRTQFIQTTEQELRTLTTQIIDLQNQLNQATAQLQNNQLTAPETG
ILHISSALKGKALLPKGTEIAQIYPDITKTKEVLITYYVPSAYMTNLKKGQTSRLTLEKIGNHTITIIGKINSIDTSATE
TKQGNLFKITARAFVSKRDSQILKYGLQGQVTSVIAKKSFFHYYKDKLLNNVE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=999910 EL079_RS04740 WP_003030685.1 978586..979947(+) (comB) [Streptococcus anginosus strain NCTC10713]
ATGAATCCCAATCTGTTTAAAAGTGCAGAATTTTATCATCGAAGATACCACAACTTTGCGACCGTTCTCATTCTGCCTTT
GGTATTCTTCGTTCTATTTCTTGTTCTTTTTTCCTTTATCGGGCAAAAAGAAGTGACTGTCAAATCCATTGGCGAAATCA
CACCAACGAAAGTCATTGCCATGATTCAGTCAACCAGTGACAATACGGTTCTGACCAATCATTTAGCTGAAAATAAGACC
GTCACCAAAGGAGAGTTGTTGGTTCAATATACAAAAAATATGGAAGCTTCCCAACAAACAGCCATTGAAACGCAACTTGC
CACTTACCAGCGCCAAAAAGCAGAATTAGAAACATTAAAAAATAGTTTACAGCAGGGAACAAATCTTTTTACAGACAAAG
ATGAGTTTGGCTATGCCAACACATTTAACAATTTTATCAAACAATCAGAAGATTTAACTATCGGCATTTCAAAAAATAAT
TCCGAAGTTAGTAAACAAGCTTCTTTAACCAACCATACGATTGCTGCTATTGATGAGCAAATGAACGAATTAACAAAACA
AATGAATGACTATCATGAATTGTATAATGCCATTTCTAGCAACGTTTCAAATTTGCCAAAAAGCAATCCTCATCAAGCAA
CCTTTAACCTATATAAAAATGAATATCACGTCAAACATGATTCGTCAACTACAAATCAATACTTAGCTCAAATTGATACA
AAGATATCCAGCCTAAATTCTTCCATTGCCAATCTAAAGATTCAAAAAGCTAGTGCCGGAACTGCAACGACCTATGACAA
TAGTCTTTCGACTAAAATTGAGGTACTTCGCACACAATTTATCCAGACCACAGAGCAAGAATTAAGAACCCTTACAACTC
AGATAATCGATTTGCAAAATCAATTGAACCAAGCAACTGCTCAACTTCAAAACAATCAGTTAACTGCTCCTGAAACAGGT
ATTCTTCATATCAGCAGTGCGCTCAAAGGAAAGGCTTTACTACCAAAAGGAACGGAAATTGCTCAGATCTATCCAGATAT
CACGAAAACAAAAGAAGTTCTTATCACCTATTACGTGCCTTCAGCCTATATGACCAATTTAAAAAAGGGACAAACTTCCC
GCCTTACTCTAGAAAAAATTGGAAATCATACAATCACTATTATCGGTAAAATTAACAGCATTGACACTTCTGCTACTGAA
ACAAAACAGGGAAACCTGTTTAAAATCACTGCAAGAGCCTTTGTATCTAAAAGAGATAGCCAGATCTTGAAGTACGGTTT
GCAAGGACAAGTAACGAGTGTCATTGCGAAAAAATCATTCTTTCATTACTACAAAGATAAACTGTTAAACAACGTTGAAT
GA

Domains

Predicted by InterProScan.

HlyD family secretion protein ()

(314-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus gordonii str. Challis substr. CH1

36.364

99.558

0.362

Multiple sequence alignment