Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   ABDK11_RS11945 Genome accession   NZ_CP155567
Coordinates   2756732..2757055 (-) Length   107 a.a.
NCBI ID   WP_346836733.1    Uniprot ID   -
Organism   Microbulbifer sp. SAOS-129_SWC     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2751732..2762055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDK11_RS11930 (ABDK11_11930) - 2752837..2754768 (-) 1932 WP_346836731.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ABDK11_RS11935 (ABDK11_11935) - 2754841..2755728 (-) 888 WP_346840199.1 glycosyltransferase family 4 protein -
  ABDK11_RS11940 (ABDK11_11940) - 2755728..2756657 (-) 930 WP_346836732.1 NAD(P)-dependent oxidoreductase -
  ABDK11_RS11945 (ABDK11_11945) comE1/comEA 2756732..2757055 (-) 324 WP_346836733.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABDK11_RS11950 (ABDK11_11950) pyrF 2757182..2757901 (-) 720 WP_346836734.1 orotidine-5'-phosphate decarboxylase -
  ABDK11_RS11955 (ABDK11_11955) lapB 2758010..2759200 (-) 1191 WP_346836735.1 lipopolysaccharide assembly protein LapB -
  ABDK11_RS11960 (ABDK11_11960) - 2759203..2759511 (-) 309 WP_346836736.1 LapA family protein -
  ABDK11_RS11965 (ABDK11_11965) ihfB 2759604..2759915 (-) 312 WP_346836737.1 integration host factor subunit beta -
  ABDK11_RS11970 (ABDK11_11970) rpsA 2760058..2761737 (-) 1680 WP_346836738.1 30S ribosomal protein S1 -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11301.95 Da        Isoelectric Point: 4.6127

>NTDB_id=997797 ABDK11_RS11945 WP_346836733.1 2756732..2757055(-) (comE1/comEA) [Microbulbifer sp. SAOS-129_SWC]
MKNVFRTPLAVCFAALLMVCGSAWTVAEESTADSTAGEAAVAAASVNLNSASAEELADKLDGIGAVRAEMIVKYRDEHGP
FTSVEQLLDIKGIGTATLEKNRTRIML

Nucleotide


Download         Length: 324 bp        

>NTDB_id=997797 ABDK11_RS11945 WP_346836733.1 2756732..2757055(-) (comE1/comEA) [Microbulbifer sp. SAOS-129_SWC]
ATGAAGAATGTCTTTCGCACTCCGCTTGCTGTATGTTTCGCTGCGTTACTGATGGTCTGTGGCTCAGCCTGGACTGTGGC
CGAGGAGTCCACTGCGGACTCAACGGCAGGCGAAGCGGCAGTAGCCGCAGCCAGCGTCAACCTGAACAGCGCCTCCGCCG
AGGAGCTGGCTGACAAGCTTGACGGTATCGGCGCGGTGCGCGCTGAAATGATTGTAAAATACCGCGATGAGCACGGTCCT
TTTACTTCGGTCGAGCAGCTGCTCGATATCAAGGGTATCGGTACCGCGACGCTGGAGAAAAATCGCACTCGAATCATGCT
CTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

47.368

100

0.505
  comEA/comE1 Glaesserella parasuis strain SC1401

42.735

100

0.467
  comEA Vibrio campbellii strain DS40M4

45

93.458

0.421
  comEA Vibrio cholerae C6706

40.777

96.262

0.393
  comEA Vibrio cholerae strain A1552

40.777

96.262

0.393
  comEA Vibrio parahaemolyticus RIMD 2210633

44.565

85.981

0.383

Multiple sequence alignment