Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PXT33_RS09880 Genome accession   NZ_CP155552
Coordinates   1990763..1992574 (+) Length   603 a.a.
NCBI ID   WP_332376444.1    Uniprot ID   -
Organism   Faecalibacterium taiwanense strain HLW78     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1985763..1997574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXT33_RS09860 (PXT33_009860) - 1986029..1986685 (-) 657 WP_097775336.1 sortase -
  PXT33_RS09865 (PXT33_009865) - 1986766..1987749 (-) 984 WP_332376440.1 Na/Pi symporter -
  PXT33_RS09870 (PXT33_009870) - 1987952..1988458 (+) 507 WP_332376441.1 MarR family transcriptional regulator -
  PXT33_RS09875 (PXT33_009875) - 1988455..1990761 (+) 2307 WP_332376443.1 ABC transporter ATP-binding protein -
  PXT33_RS09880 (PXT33_009880) rcrQ 1990763..1992574 (+) 1812 WP_332376444.1 ABC transporter ATP-binding protein Regulator
  PXT33_RS09885 (PXT33_009885) - 1992788..1993711 (-) 924 WP_332376445.1 LysR family transcriptional regulator -
  PXT33_RS09890 (PXT33_009890) - 1993872..1995902 (+) 2031 WP_332376446.1 FAD-binding protein -
  PXT33_RS09895 (PXT33_009895) - 1996104..1997024 (+) 921 WP_207699006.1 AAA family ATPase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66805.20 Da        Isoelectric Point: 6.8467

>NTDB_id=997698 PXT33_RS09880 WP_332376444.1 1990763..1992574(+) (rcrQ) [Faecalibacterium taiwanense strain HLW78]
MPRPGRMTTERAKDFKGTLLQLVRNLGRYRLSLVTAIVFAILSTIFNIAGPKVLAKATTALATGWIAKLRGTGSIDFVYI
GRILLFLLGMYLLSSAFSFIQGWLMTGLSQKVCYDFRKQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLVMMLSISPKMTLIALLILPVSLVLVLIVVKFSQKYFKAQQAILGVVNGQVEEVYSGHNVVKAFNREA
VVLNDFNAANNKLYESAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAANGTITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMAAAAERVFEFLNEPEEDQQADPARRADPACINGQVTFSHVRFGYTPDKTIIHDFSCEVKPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARTILADNRILILDEATSSVDTRTEQRIQTAMDRLMEGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEAGGFYADLYNSQFEDVVE

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=997698 PXT33_RS09880 WP_332376444.1 1990763..1992574(+) (rcrQ) [Faecalibacterium taiwanense strain HLW78]
ATGCCAAGACCCGGACGCATGACGACCGAACGCGCCAAGGACTTCAAGGGCACCCTGCTGCAGCTTGTGCGCAACCTTGG
CCGCTACCGCCTTTCGCTCGTTACCGCCATTGTATTTGCCATTCTTTCTACCATCTTCAATATTGCAGGCCCTAAGGTGC
TGGCAAAGGCCACCACGGCTCTTGCCACCGGCTGGATCGCCAAGCTGCGCGGCACCGGCAGCATCGACTTTGTGTATATC
GGCCGCATCCTGCTGTTTTTGCTGGGCATGTACCTGCTGAGCAGCGCCTTCAGCTTTATTCAGGGCTGGCTCATGACCGG
CCTTTCCCAGAAAGTCTGCTACGACTTCCGCAAGCAGATCAGCGAAAAGATCAACCGCCTGCCCCTTGCCTACTTTGAAA
AGCGCACCGTGGGCGAGGTGCTGTCCCGCATCACCAACGATGTGGACACGCTGGGCCAGAGCCTGAACCAGAGCATCACC
CAGCTCATCACCAGTGTGACCACCATGATCGGCGTGCTGGTCATGATGCTGTCCATCAGCCCGAAGATGACCCTGATCGC
CCTGCTGATCCTGCCGGTCTCGCTGGTGCTGGTGCTCATCGTGGTCAAGTTCAGCCAGAAATACTTCAAGGCCCAGCAGG
CCATTCTGGGCGTTGTGAACGGTCAGGTGGAAGAAGTCTACTCCGGCCACAACGTGGTCAAAGCCTTCAACCGCGAGGCC
GTGGTGCTGAACGACTTCAACGCCGCCAACAATAAGCTGTACGAATCCGCATGGAAGAGCCAGTTTCTCTCCGGCCTGAT
GATGCCCATTATGAACTTTGTGGGCAATCTGGGCTACGTGGCAGTGGCCATCGTGGGCAGCATTTTTGCGGCAAACGGCA
CCATTACCATCGGCGACATTCAGGCCTTCATCCAGTACGTCAAGAACTTCACCCAGCCCATCCAGCAGCTTTCTCAGGTG
TCCAACATGCTGCAGAGCATGGCCGCTGCCGCTGAGCGGGTGTTCGAGTTTCTGAACGAGCCGGAAGAGGATCAGCAGGC
AGACCCGGCCCGCCGGGCCGACCCTGCCTGCATCAACGGTCAGGTGACATTCAGTCATGTCCGCTTCGGCTACACCCCGG
ACAAGACCATCATCCACGATTTCAGCTGTGAGGTCAAGCCCGGCCAGAAGGTGGCTATCGTCGGCCCTACCGGCGCGGGC
AAAACTACCATGGTCAAGCTGCTCATGCGCTTCTATGATGTGGATTCCGGTTCCATCACCCTGAATGGCCACGATGTGCG
TGACTTTGACCGCAGCGCTCTGCGCGAGGGCTTCGGCATGGTGCTGCAGGACACATGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGCTATGGCCGTCTGGATGCTACCGACGAAGAAGTGATCGCCGCCGCCAAGGCTGCCAACGCTGACCACTTT
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAGGACGCTTCCAACGTGAGTCAGGGCCAGAAGCAGCTGCT
CACCATCGCCCGCACCATTCTGGCAGATAACCGCATCCTGATTTTGGACGAGGCCACCAGCAGTGTGGATACCCGCACCG
AGCAGCGCATCCAAACCGCCATGGACCGCCTGATGGAGGGCCGCACCAGCTTTGTGATCGCACACCGTCTTTCCACCATC
CGGGATGCCGACCTCATCCTTGTGATGCGAGATGGCGATATTGTGGAGCAGGGCACCCACGACCAGCTGATCGAAGCAGG
CGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGAGGACGTGGTGGAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(379-527)

ABC transporter transmembrane region (ABC_membrane)

(34-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.937

97.347

0.496

Multiple sequence alignment