Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ELZ51_RS00865 Genome accession   NZ_LR134094
Coordinates   132455..132883 (+) Length   142 a.a.
NCBI ID   WP_115252504.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 127455..137883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS00845 (NCTC4669_00179) - 129798..130163 (+) 366 WP_126425649.1 DUF1033 family protein -
  ELZ51_RS00850 (NCTC4669_00180) comGA 130244..131185 (+) 942 WP_126425651.1 competence type IV pilus ATPase ComGA Machinery gene
  ELZ51_RS00855 (NCTC4669_00181) comGB 131121..132152 (+) 1032 WP_126427580.1 competence type IV pilus assembly protein ComGB Machinery gene
  ELZ51_RS00860 (NCTC4669_00182) comGC 132154..132480 (+) 327 WP_115246891.1 competence type IV pilus major pilin ComGC Machinery gene
  ELZ51_RS00865 (NCTC4669_00183) comGD 132455..132883 (+) 429 WP_115252504.1 competence type IV pilus minor pilin ComGD Machinery gene
  ELZ51_RS00870 (NCTC4669_00184) comGE 132840..133136 (+) 297 WP_003061797.1 competence type IV pilus minor pilin ComGE Machinery gene
  ELZ51_RS00875 (NCTC4669_00185) comGF 133117..133557 (+) 441 WP_003049266.1 competence type IV pilus minor pilin ComGF Machinery gene
  ELZ51_RS00880 (NCTC4669_00186) comGG 133580..133909 (+) 330 WP_226316716.1 competence type IV pilus minor pilin ComGG -
  ELZ51_RS00885 (NCTC4669_00187) comGH 133972..134925 (+) 954 WP_126425653.1 class I SAM-dependent methyltransferase Machinery gene
  ELZ51_RS00890 (NCTC4669_00188) - 134984..136180 (+) 1197 WP_003049273.1 acetate kinase -
  ELZ51_RS00895 (NCTC4669_00189) - 136490..136696 (+) 207 WP_003049274.1 helix-turn-helix transcriptional regulator -
  ELZ51_RS00900 (NCTC4669_00190) - 136744..137058 (+) 315 Protein_131 CPBP family intramembrane glutamic endopeptidase -
  ELZ51_RS11215 (NCTC4669_00191) - 137076..137513 (+) 438 WP_003049278.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16423.87 Da        Isoelectric Point: 9.8758

>NTDB_id=997700 ELZ51_RS00865 WP_115252504.1 132455..132883(+) (comGD) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MKSPVLNLKAYTLLESLLTLSVTSFIVLGLSVPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAA
EEWLTIPESIRVKNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=997700 ELZ51_RS00865 WP_115252504.1 132455..132883(+) (comGD) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGAAAAGTCCAGTCTTAAACCTTAAAGCTTATACGCTGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGT
CTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCGAAGGGTTCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGAGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCA
GAGGAGTGGTTAACAATACCTGAGTCGATAAGGGTTAAGAATAGTCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

44.961

90.845

0.408
  comGD Streptococcus mutans UA159

44.961

90.845

0.408
  comGD Streptococcus gordonii str. Challis substr. CH1

43.511

92.254

0.401
  comGD/cglD Streptococcus mitis NCTC 12261

38.849

97.887

0.38