Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEC/celB   Type   Machinery gene
Locus tag   ABC811_RS05565 Genome accession   NZ_CP155535
Coordinates   1080853..1083093 (-) Length   746 a.a.
NCBI ID   WP_000942422.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PJ755/1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1075853..1088093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC811_RS05530 (ABC811_05525) - 1076754..1077134 (-) 381 WP_000157154.1 VOC family protein -
  ABC811_RS05535 (ABC811_05530) rplT 1077192..1077551 (-) 360 WP_000124836.1 50S ribosomal protein L20 -
  ABC811_RS05540 (ABC811_05535) rpmI 1077603..1077803 (-) 201 WP_001125943.1 50S ribosomal protein L35 -
  ABC811_RS05545 (ABC811_05540) infC 1077836..1078366 (-) 531 WP_000848180.1 translation initiation factor IF-3 -
  ABC811_RS05550 (ABC811_05545) - 1078687..1079862 (-) 1176 WP_000655940.1 hypothetical protein -
  ABC811_RS05555 (ABC811_05550) - 1079866..1080453 (-) 588 WP_000933542.1 ABC transporter ATP-binding protein -
  ABC811_RS05560 (ABC811_05555) - 1080485..1080673 (-) 189 WP_010976492.1 hypothetical protein -
  ABC811_RS05565 (ABC811_05560) comEC/celB 1080853..1083093 (-) 2241 WP_000942422.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABC811_RS05570 (ABC811_05565) comEA/celA/cilE 1083077..1083727 (-) 651 WP_000387352.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABC811_RS05575 (ABC811_05570) - 1083795..1084364 (-) 570 WP_000443745.1 GNAT family N-acetyltransferase -
  ABC811_RS05580 (ABC811_05575) ald 1084541..1085652 (+) 1112 Protein_1103 alanine dehydrogenase -
  ABC811_RS05585 (ABC811_05580) - 1085953..1086279 (-) 327 Protein_1104 TfoX/Sxy family protein -
  ABC811_RS05590 (ABC811_05585) - 1086282..1086782 (-) 501 WP_000566988.1 GNAT family N-acetyltransferase -
  ABC811_RS05595 (ABC811_05590) - 1086962..1087930 (-) 969 WP_000658181.1 PhoH family protein -

Sequence


Protein


Download         Length: 746 a.a.        Molecular weight: 84696.39 Da        Isoelectric Point: 9.4461

>NTDB_id=997321 ABC811_RS05565 WP_000942422.1 1080853..1083093(-) (comEC/celB) [Streptococcus pneumoniae strain PJ755/1]
MLQWIKNFSIPLIYLSFLLLWLYYAIFSVSYFALLGFVFLLVCLFIQFPWKSAGKVLVICGVFGFWFLFQTWQQSQVSQN
LVDSVERVRILPDTIKVNGDSLSFRGKSDGRAFQVYYKLQSEEEKEAFQALTDLHEIGLEGKLSEPEGQRNFGGFDYQGY
LKTQGIYQTLNIKRIQSLQKVGSWDIGENLSSLRRKAVVWIKMHFPDPMRNYMTGLLLGHLDTDFEEMNELYSSLGIIHL
FALSGMQVGFFMDGFKKLLLRLGLTQEKLKWLTYPFSLIYAGLTGFSASVIRSLLQKLLAQHGVKGLDNFALTVLVLFIV
MPNFFLTAGGVLSCAYAFILTMTSKEGEGLKAVTSESLVISLGILPILSFYFAEFQPWSILLTFVFSFLFDLVFLPLLSI
LFVLSFLYPVIQLNFIFEWLEGIIRLVSQVASRPLVFGQPNEWLLILLLISLALVYDLRKNIKKLTVLCLLITGLFLLTK
HPLENEITMLDVGQGESIFLRDVTGKTILIDVGGKAESYKKIKKWQEKMTTSNAQRSLIPYLKSRGVAKIDQLILTNTDK
EHVGDLSEMTKAFHVGEILVSKDSLKQKEFVAELQATQTKVRSMIVGENLPIFGSQLEVLSPRKMGDGGHDDTLVLYGKF
LDKQFLFTGNLEEKGEKDLLKHYPDLKVNVLKASQHGNKKSSSPAFLEKLKPELTLISVGKSNRMKLPHQETLTRLEGIN
SKVYRTDQQGAIRFKGLDSWKIESVR

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=997321 ABC811_RS05565 WP_000942422.1 1080853..1083093(-) (comEC/celB) [Streptococcus pneumoniae strain PJ755/1]
ATGTTACAGTGGATTAAGAATTTCTCTATTCCCCTAATTTACCTGAGTTTTCTATTACTATGGCTTTACTACGCCATTTT
CTCAGTATCCTATTTTGCTTTGTTGGGTTTTGTTTTTCTGCTAGTCTGCCTCTTTATCCAATTTCCTTGGAAATCAGCAG
GTAAAGTTCTAGTGATTTGTGGAGTCTTTGGCTTCTGGTTTCTGTTTCAAACTTGGCAACAGAGTCAAGTGAGTCAAAAT
TTGGTGGATTCTGTTGAAAGGGTACGGATTTTACCAGACACTATTAAGGTTAACGGTGACAGTCTGTCCTTTCGTGGTAA
GTCTGATGGTCGTGCTTTCCAAGTCTATTATAAACTCCAGTCCGAGGAGGAGAAAGAAGCCTTTCAAGCTTTAACTGACC
TTCATGAGATAGGACTAGAAGGGAAGCTTTCGGAGCCAGAAGGGCAGAGAAATTTTGGTGGCTTTGACTACCAAGGCTAT
CTGAAGACTCAGGGAATTTACCAGACACTCAATATTAAAAGAATCCAGTCACTCCAAAAGGTTGGCAGTTGGGATATAGG
TGAAAACCTGTCCAGTTTACGTCGAAAGGCTGTGGTTTGGATTAAGATGCACTTCCCAGACCCTATGCGCAATTACATGA
CAGGACTCTTGCTAGGACATCTGGACACCGATTTTGAGGAGATGAATGAGCTTTATTCCAGTTTAGGAATTATTCACCTT
TTTGCCTTGTCAGGTATGCAGGTAGGGTTTTTCATGGACGGATTTAAGAAACTACTTTTACGATTGGGCTTGACACAAGA
AAAGTTGAAGTGGCTGACTTATCCCTTTTCCCTTATCTATGCGGGACTAACTGGATTTTCAGCATCGGTTATTCGCAGTC
TCTTGCAAAAGCTACTGGCTCAACATGGGGTTAAGGGCTTGGATAATTTTGCCTTGACGGTGCTTGTCCTCTTTATTGTC
ATGCCAAACTTTTTCTTGACAGCAGGAGGAGTCTTGTCCTGTGCTTATGCTTTTATCCTGACCATGACCAGCAAAGAAGG
GGAGGGGCTCAAGGCTGTTACTAGTGAAAGTCTAGTCATCTCCTTGGGCATATTGCCCATTCTATCCTTCTATTTTGCGG
AATTTCAACCTTGGTCTATCCTTTTGACCTTTGTCTTTTCCTTTCTTTTTGACTTGGTCTTCTTACCGCTCTTGTCTATC
TTATTTGTCCTTTCCTTTCTCTATCCAGTCATTCAGCTGAACTTTATCTTTGAATGGTTAGAGGGCATTATTCGCTTGGT
CTCGCAGGTGGCAAGTAGACCGCTTGTCTTTGGACAACCCAATGAATGGCTTTTAATCCTATTGTTAATTTCTTTGGCTT
TGGTCTATGATTTGAGGAAAAACATTAAAAAGCTAACGGTATTGTGCTTATTGATTACAGGGCTCTTTCTCCTGACCAAG
CATCCACTGGAAAATGAAATCACCATGCTGGATGTGGGGCAAGGAGAAAGTATTTTCCTACGGGATGTAACTGGGAAAAC
CATTCTCATAGATGTAGGTGGTAAGGCAGAATCTTATAAGAAAATCAAAAAATGGCAAGAAAAGATGACGACCAGCAATG
CCCAGCGAAGCTTGATACCCTATCTCAAAAGTCGAGGAGTAGCTAAGATTGACCAGCTAATTTTGACTAACACGGACAAG
GAGCATGTTGGAGATTTGTCAGAGATGACCAAGGCTTTCCATGTAGGGGAGATTCTAGTATCAAAAGACAGTCTGAAACA
GAAGGAATTTGTGGCAGAACTACAGGCGACTCAAACAAAGGTGCGTAGTATGATAGTAGGGGAGAACTTACCCATTTTTG
GAAGTCAGTTAGAAGTTCTATCTCCAAGGAAAATGGGAGATGGAGGACACGATGATACCCTAGTTCTGTATGGGAAATTC
TTGGATAAGCAATTTCTCTTCACGGGAAATTTGGAGGAGAAAGGAGAGAAGGACTTGCTGAAGCACTATCCAGACTTGAA
AGTAAATGTTTTGAAAGCTAGCCAACATGGCAATAAAAAATCATCAAGTCCAGCCTTTCTAGAAAAACTCAAACCAGAGC
TTACTCTTATCTCAGTTGGAAAGAGCAATCGAATGAAACTCCCCCATCAGGAAACATTGACACGACTGGAAGGTATCAAT
AGCAAAGTTTATCGAACTGACCAGCAAGGAGCTATACGTTTTAAGGGGTTGGATAGTTGGAAAATCGAAAGTGTTCGATA
G


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus pneumoniae Rx1

96.917

100

0.969

  comEC/celB Streptococcus pneumoniae D39

96.917

100

0.969

  comEC/celB Streptococcus pneumoniae R6

96.917

100

0.969

  comEC/celB Streptococcus pneumoniae TIGR4

96.917

100

0.969

  comEC/celB Streptococcus mitis SK321

91.689

100

0.917

  comEC/celB Streptococcus mitis NCTC 12261

91.409

99.866

0.913

  comEC Lactococcus lactis subsp. cremoris KW2

44.399

99.33

0.441


Multiple sequence alignment