Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   ABDA66_RS04775 Genome accession   NZ_CP155431
Coordinates   939446..940708 (-) Length   420 a.a.
NCBI ID   WP_057773339.1    Uniprot ID   -
Organism   Pediococcus inopinatus strain DMPI11     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 934446..945708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDA66_RS04755 (ABDA66_04735) - 934796..936772 (+) 1977 WP_063696472.1 CDP-glycerol glycerophosphotransferase family protein -
  ABDA66_RS04760 (ABDA66_04740) - 936912..937256 (-) 345 WP_057773333.1 hypothetical protein -
  ABDA66_RS04765 (ABDA66_04745) msrA 937430..938254 (+) 825 WP_406827446.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ABDA66_RS04770 (ABDA66_04750) rlmH 938295..938774 (-) 480 WP_057773337.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ABDA66_RS04775 (ABDA66_04755) htrA 939446..940708 (-) 1263 WP_057773339.1 S1C family serine protease Regulator
  ABDA66_RS04780 (ABDA66_04760) - 940819..941622 (-) 804 WP_057773341.1 MBL fold metallo-hydrolase -
  ABDA66_RS04785 (ABDA66_04765) - 941674..942756 (-) 1083 WP_063696468.1 two-component system regulatory protein YycI -
  ABDA66_RS04790 (ABDA66_04770) - 942771..944093 (-) 1323 WP_323709048.1 hypothetical protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 43329.81 Da        Isoelectric Point: 10.0905

>NTDB_id=996310 ABDA66_RS04775 WP_057773339.1 939446..940708(-) (htrA) [Pediococcus inopinatus strain DMPI11]
MFKNKNLWTVIITALVAGLIGGGIAFGAANYMSNRQAESETAVPSGSNSTGSTKTSNVKVNVSSQSEKAYSSIKNAVVTV
INLKKESSTSSNSLYGSIFGDSSSSSNSSSSDSSKLETYAEGSGVIYKKSGNAAYVVTNNHVISGSNAVEIIMSNGKKLS
AKVVGKDTVTDLAVLKINSSSVSTVASFGDSNSIKVGETALAIGSPLGSDYATSLTQGIVSAKKRTVATMNEAGQETGEA
TVIQTDAAINSGNSGGPLINLAGQVIGINSMKLSSSSSSGTSVEGMGFAIPSNEVVTIINQLISKGKIVRPAIGASLLDL
TDITASQQKSVLKLSSKVNEGAVIYKTYAGSPARNAGLKKYDVITKLDGTKITSVATLRDKLYKLKVGDSVKITWYRGNT
QKTGTIKLTETTSELSSEAK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=996310 ABDA66_RS04775 WP_057773339.1 939446..940708(-) (htrA) [Pediococcus inopinatus strain DMPI11]
ATGTTTAAAAATAAAAATTTATGGACAGTTATCATTACAGCATTAGTTGCTGGTTTAATTGGTGGAGGAATTGCATTTGG
GGCGGCTAATTACATGAGTAATCGGCAGGCCGAATCGGAAACGGCGGTTCCAAGTGGTTCCAACAGCACCGGTTCGACAA
AAACCAGTAATGTGAAGGTCAATGTTAGTAGCCAATCCGAAAAAGCTTACAGCAGCATTAAAAACGCCGTTGTGACGGTC
ATTAATTTAAAGAAGGAAAGTTCTACTTCAAGTAATAGTCTTTACGGATCTATCTTTGGAGACTCATCTTCAAGTTCTAA
TTCCAGTAGTTCAGATTCCAGCAAGTTAGAAACCTACGCTGAAGGTTCTGGTGTCATTTACAAGAAGAGTGGCAATGCGG
CCTATGTTGTAACGAATAACCATGTTATTTCAGGTTCTAACGCAGTAGAAATCATCATGAGTAATGGTAAGAAGCTATCT
GCGAAAGTGGTTGGAAAAGATACTGTAACTGATTTGGCTGTTTTGAAGATTAATTCTTCATCGGTTTCAACAGTTGCGAG
TTTCGGAGATTCAAACAGTATTAAAGTTGGTGAAACAGCCTTAGCAATTGGTTCTCCTCTAGGTTCTGATTATGCAACTT
CGTTAACGCAAGGAATTGTTTCTGCTAAGAAGCGAACAGTTGCCACAATGAATGAAGCCGGTCAAGAAACGGGCGAAGCA
ACTGTTATTCAAACGGATGCAGCCATTAACTCAGGTAATTCAGGTGGTCCGTTGATCAATTTAGCTGGTCAAGTTATCGG
AATTAATTCGATGAAACTTTCTAGCAGTAGTTCTTCTGGTACGAGCGTTGAAGGGATGGGATTTGCGATTCCTTCCAATG
AAGTTGTGACGATTATTAATCAATTAATTTCTAAAGGTAAAATTGTTAGGCCAGCGATTGGAGCATCCTTGTTGGATTTG
ACAGATATTACTGCTAGTCAGCAAAAGTCAGTTTTGAAGCTCTCTTCAAAGGTAAACGAAGGGGCTGTAATCTATAAGAC
ATACGCCGGTTCACCAGCACGTAATGCCGGTTTGAAGAAGTACGATGTTATTACTAAGTTGGATGGCACTAAGATTACCA
GTGTGGCAACGCTGCGAGATAAGTTATATAAACTCAAAGTCGGCGATTCAGTTAAAATCACATGGTACCGAGGTAACACT
CAGAAAACAGGAACAATCAAGCTAACAGAAACAACCAGTGAGTTGAGTTCCGAAGCTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(208-414)

Trypsin-like peptidase domain (Trypsin_2)

(122-268)

PDZ domain (PDZ_2)

(311-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

49.148

97.857

0.481
  htrA Streptococcus gordonii str. Challis substr. CH1

44.365

99.286

0.44
  htrA Streptococcus mitis NCTC 12261

43.796

97.857

0.429
  htrA Streptococcus pneumoniae Rx1

46.571

83.333

0.388
  htrA Streptococcus pneumoniae D39

46.571

83.333

0.388
  htrA Streptococcus pneumoniae R6

46.571

83.333

0.388
  htrA Streptococcus pneumoniae TIGR4

46.571

83.333

0.388

Multiple sequence alignment