Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AAVB98_RS11880 Genome accession   NZ_CP154895
Coordinates   2270078..2270500 (+) Length   140 a.a.
NCBI ID   WP_269467498.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2265078..2275500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS11850 (AAVB98_11850) degS 2265096..2266259 (+) 1164 WP_061573631.1 two-component sensor histidine kinase DegS Regulator
  AAVB98_RS11855 (AAVB98_11855) degU 2266336..2267025 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAVB98_RS11860 (AAVB98_11860) - 2267122..2267970 (+) 849 WP_013353786.1 DegV family protein -
  AAVB98_RS11865 (AAVB98_11865) comFA 2268077..2269462 (+) 1386 WP_061573632.1 DEAD/DEAH box helicase Machinery gene
  AAVB98_RS11870 (AAVB98_11870) - 2269521..2269805 (+) 285 WP_013353784.1 competence protein ComFB -
  AAVB98_RS11875 (AAVB98_11875) - 2269823..2269981 (+) 159 Protein_2290 double zinc ribbon domain-containing protein -
  AAVB98_RS11880 (AAVB98_11880) comFC 2270078..2270500 (+) 423 WP_269467498.1 phosphoribosyltransferase family protein Machinery gene
  AAVB98_RS11885 (AAVB98_11885) - 2270574..2270993 (+) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  AAVB98_RS11890 (AAVB98_11890) flgM 2271063..2271329 (+) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAVB98_RS11895 (AAVB98_11895) - 2271344..2271826 (+) 483 WP_013353780.1 flagellar protein FlgN -
  AAVB98_RS11900 (AAVB98_11900) flgK 2271842..2273359 (+) 1518 WP_013353779.1 flagellar hook-associated protein FlgK -
  AAVB98_RS11905 (AAVB98_11905) flgL 2273371..2274288 (+) 918 WP_013353778.1 flagellar hook-associated protein FlgL -
  AAVB98_RS11910 (AAVB98_11910) - 2274380..2274949 (+) 570 WP_014471091.1 DUF6470 family protein -
  AAVB98_RS11915 (AAVB98_11915) fliW 2274979..2275410 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15269.62 Da        Isoelectric Point: 10.3581

>NTDB_id=994786 AAVB98_RS11880 WP_269467498.1 2270078..2270500(+) (comFC) [Bacillus amyloliquefaciens strain Fad 77]
MARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRLNNEKQSKKS
KTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 423 bp        

>NTDB_id=994786 AAVB98_RS11880 WP_269467498.1 2270078..2270500(+) (comFC) [Bacillus amyloliquefaciens strain Fad 77]
TTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACGTGATTTTACTGCCGGCTTTAAAGCGGC
ATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGCTGGCGGAGCGCGGATTTAATCAATCCG
AGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTGAACAATGAAAAACAATCCAAAAAGAGC
AAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGCCGAAGGTATGAACGTCATTTTAATAGA
CGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGACAGCAGGCAAAGCGTTATCGGTCTCCT
CTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(77-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

65.714

100

0.657
  comFC/cflB Streptococcus mitis NCTC 12261

37.41

99.286

0.371
  comFC/cflB Streptococcus mitis SK321

36.691

99.286

0.364

Multiple sequence alignment