Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AAVB98_RS11855 Genome accession   NZ_CP154895
Coordinates   2266336..2267025 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2261336..2272025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS11835 (AAVB98_11835) - 2261771..2262847 (+) 1077 WP_013353790.1 MraY family glycosyltransferase -
  AAVB98_RS11840 (AAVB98_11840) - 2262947..2264221 (-) 1275 WP_013353789.1 LCP family protein -
  AAVB98_RS11845 (AAVB98_11845) - 2264226..2264873 (-) 648 WP_013353788.1 YigZ family protein -
  AAVB98_RS11850 (AAVB98_11850) degS 2265096..2266259 (+) 1164 WP_061573631.1 two-component sensor histidine kinase DegS Regulator
  AAVB98_RS11855 (AAVB98_11855) degU 2266336..2267025 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAVB98_RS11860 (AAVB98_11860) - 2267122..2267970 (+) 849 WP_013353786.1 DegV family protein -
  AAVB98_RS11865 (AAVB98_11865) comFA 2268077..2269462 (+) 1386 WP_061573632.1 DEAD/DEAH box helicase Machinery gene
  AAVB98_RS11870 (AAVB98_11870) - 2269521..2269805 (+) 285 WP_013353784.1 competence protein ComFB -
  AAVB98_RS11875 (AAVB98_11875) - 2269823..2269981 (+) 159 Protein_2290 double zinc ribbon domain-containing protein -
  AAVB98_RS11880 (AAVB98_11880) comFC 2270078..2270500 (+) 423 WP_269467498.1 phosphoribosyltransferase family protein Machinery gene
  AAVB98_RS11885 (AAVB98_11885) - 2270574..2270993 (+) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  AAVB98_RS11890 (AAVB98_11890) flgM 2271063..2271329 (+) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAVB98_RS11895 (AAVB98_11895) - 2271344..2271826 (+) 483 WP_013353780.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=994784 AAVB98_RS11855 WP_003219701.1 2266336..2267025(+) (degU) [Bacillus amyloliquefaciens strain Fad 77]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=994784 AAVB98_RS11855 WP_003219701.1 2266336..2267025(+) (degU) [Bacillus amyloliquefaciens strain Fad 77]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGATATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAGCAGCTTGTTGAGCTGTACCCTGAATCTAAGGTA
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATCGAGGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCACCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCTGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment