Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AAVB98_RS11865 Genome accession   NZ_CP154895
Coordinates   2268077..2269462 (+) Length   461 a.a.
NCBI ID   WP_061573632.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2263077..2274462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS11845 (AAVB98_11845) - 2264226..2264873 (-) 648 WP_013353788.1 YigZ family protein -
  AAVB98_RS11850 (AAVB98_11850) degS 2265096..2266259 (+) 1164 WP_061573631.1 two-component sensor histidine kinase DegS Regulator
  AAVB98_RS11855 (AAVB98_11855) degU 2266336..2267025 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAVB98_RS11860 (AAVB98_11860) - 2267122..2267970 (+) 849 WP_013353786.1 DegV family protein -
  AAVB98_RS11865 (AAVB98_11865) comFA 2268077..2269462 (+) 1386 WP_061573632.1 DEAD/DEAH box helicase Machinery gene
  AAVB98_RS11870 (AAVB98_11870) - 2269521..2269805 (+) 285 WP_013353784.1 competence protein ComFB -
  AAVB98_RS11875 (AAVB98_11875) - 2269823..2269981 (+) 159 Protein_2290 double zinc ribbon domain-containing protein -
  AAVB98_RS11880 (AAVB98_11880) comFC 2270078..2270500 (+) 423 WP_269467498.1 phosphoribosyltransferase family protein Machinery gene
  AAVB98_RS11885 (AAVB98_11885) - 2270574..2270993 (+) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  AAVB98_RS11890 (AAVB98_11890) flgM 2271063..2271329 (+) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAVB98_RS11895 (AAVB98_11895) - 2271344..2271826 (+) 483 WP_013353780.1 flagellar protein FlgN -
  AAVB98_RS11900 (AAVB98_11900) flgK 2271842..2273359 (+) 1518 WP_013353779.1 flagellar hook-associated protein FlgK -
  AAVB98_RS11905 (AAVB98_11905) flgL 2273371..2274288 (+) 918 WP_013353778.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52711.33 Da        Isoelectric Point: 10.2470

>NTDB_id=994785 AAVB98_RS11865 WP_061573632.1 2268077..2269462(+) (comFA) [Bacillus amyloliquefaciens strain Fad 77]
MSGGASEFSKVRDFFYGRHLLRSEIPFSDQCIKRFIEKEYITAEPSVIRRKNRYVCRRCGQSHQARFAVFWAPSAKRHIT
YCRSCVVMGRADELTSLYSWNLAAENSWEPIKLSWEGTLTDGQKQAAEALIEAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKRAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPRSVTDWV
RQKLQSRLPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTCRKDKVKRFREGRFDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEYMNKLAQKNKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=994785 AAVB98_RS11865 WP_061573632.1 2268077..2269462(+) (comFA) [Bacillus amyloliquefaciens strain Fad 77]
ATGTCCGGAGGTGCTTCAGAATTTTCGAAGGTGCGGGATTTCTTTTACGGCAGGCATTTATTGAGATCTGAGATTCCGTT
TTCTGATCAGTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAGTCATCCGCCGGAAAAACCGTT
ATGTCTGCCGCCGATGCGGCCAGTCTCACCAAGCCCGCTTTGCGGTATTTTGGGCGCCCTCTGCCAAAAGACATATTACC
TATTGCCGTTCCTGTGTCGTAATGGGAAGGGCTGATGAACTGACGTCATTATACTCTTGGAATCTAGCGGCTGAAAACAG
CTGGGAGCCTATCAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCGGAAGCGCTTATAGAAGCGA
TAAAAGAGAAACAAGAGCTGCTGGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCGCTGAATCACGGCTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGTGAGGACAAAGGCAGCTTGACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGCTATCGAGATATTTTTGATGTAATGATAATAGATGAAGTAGATGCTTTTCCTTTTTCAGCT
GATGAGACATTAAGATTTGCGGTTGATAAAGCCAGAAAGAAAAACAGCGCCCTAGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAGGGCTGAGGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCGCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCGTTCTGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGACTGCCGGTTTTCTTATTCGTTCCGTCTGTACATATATTAAGAAAGACAACGGATTATTT
TCAGAAATTAAACATCCGTGCAGAAGGCGTGCATGCGGAAGACACATGCAGAAAGGATAAAGTGAAACGGTTCAGAGAGG
GACGGTTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTACCTAAAGTCCAGACTTGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCACTCGTACAGATTGCAGGCAGAACGGGCAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGTATGAAGAAAGCAAAAAAACATATAGAATATATGAACAAATTGG
CACAAAAAAATAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.801

99.132

0.623

Multiple sequence alignment