Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   AAVB98_RS11850 Genome accession   NZ_CP154895
Coordinates   2265096..2266259 (+) Length   387 a.a.
NCBI ID   WP_061573631.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2260096..2271259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS11830 (AAVB98_11830) - 2260442..2261638 (+) 1197 WP_013353791.1 glycosyltransferase -
  AAVB98_RS11835 (AAVB98_11835) - 2261771..2262847 (+) 1077 WP_013353790.1 MraY family glycosyltransferase -
  AAVB98_RS11840 (AAVB98_11840) - 2262947..2264221 (-) 1275 WP_013353789.1 LCP family protein -
  AAVB98_RS11845 (AAVB98_11845) - 2264226..2264873 (-) 648 WP_013353788.1 YigZ family protein -
  AAVB98_RS11850 (AAVB98_11850) degS 2265096..2266259 (+) 1164 WP_061573631.1 two-component sensor histidine kinase DegS Regulator
  AAVB98_RS11855 (AAVB98_11855) degU 2266336..2267025 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAVB98_RS11860 (AAVB98_11860) - 2267122..2267970 (+) 849 WP_013353786.1 DegV family protein -
  AAVB98_RS11865 (AAVB98_11865) comFA 2268077..2269462 (+) 1386 WP_061573632.1 DEAD/DEAH box helicase Machinery gene
  AAVB98_RS11870 (AAVB98_11870) - 2269521..2269805 (+) 285 WP_013353784.1 competence protein ComFB -
  AAVB98_RS11875 (AAVB98_11875) - 2269823..2269981 (+) 159 Protein_2290 double zinc ribbon domain-containing protein -
  AAVB98_RS11880 (AAVB98_11880) comFC 2270078..2270500 (+) 423 WP_269467498.1 phosphoribosyltransferase family protein Machinery gene
  AAVB98_RS11885 (AAVB98_11885) - 2270574..2270993 (+) 420 WP_013353782.1 TIGR03826 family flagellar region protein -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45127.99 Da        Isoelectric Point: 7.5132

>NTDB_id=994783 AAVB98_RS11850 WP_061573631.1 2265096..2266259(+) (degS) [Bacillus amyloliquefaciens strain Fad 77]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIRDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKLGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=994783 AAVB98_RS11850 WP_061573631.1 2265096..2266259(+) (degS) [Bacillus amyloliquefaciens strain Fad 77]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTCGAAGTACATACCCGGCATGCAAGAAACCGCTTGTCGGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCGGCTCAAATGCTGGCAAATGTTATGATGAGATCGGAATTGATAGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCCGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCGCTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTGGTTCTTATTATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTCGAAGGAACGATAACGATAGACTCTAAACTAGGTCTTG
GGACATTTATCATGATTAAGGTTCCTTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.065

99.483

0.946

Multiple sequence alignment