Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAG895_RS01860 Genome accession   NZ_CP154859
Coordinates   429704..431218 (+) Length   504 a.a.
NCBI ID   WP_345793870.1    Uniprot ID   -
Organism   Thauera sp. JM12B12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 424704..436218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG895_RS01830 (AAG895_01830) - 425705..426196 (+) 492 WP_345793864.1 thioesterase family protein -
  AAG895_RS01835 (AAG895_01835) - 426204..426548 (+) 345 WP_345793865.1 cupin domain-containing protein -
  AAG895_RS01840 (AAG895_01840) amt 426663..427985 (-) 1323 WP_345793866.1 ammonium transporter -
  AAG895_RS01845 (AAG895_01845) glnK 428000..428338 (-) 339 WP_345793867.1 P-II family nitrogen regulator -
  AAG895_RS01850 (AAG895_01850) - 428375..429082 (-) 708 WP_345793868.1 TorF family putative porin -
  AAG895_RS01855 (AAG895_01855) - 429345..429596 (+) 252 WP_345793869.1 accessory factor UbiK family protein -
  AAG895_RS01860 (AAG895_01860) comM 429704..431218 (+) 1515 WP_345793870.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAG895_RS01865 (AAG895_01865) - 431284..432480 (+) 1197 WP_345793871.1 multidrug effflux MFS transporter -
  AAG895_RS01870 (AAG895_01870) - 432484..432876 (-) 393 WP_345793872.1 rhodanese-like domain-containing protein -
  AAG895_RS01875 (AAG895_01875) - 433147..433986 (+) 840 WP_345793873.1 ABC transporter ATP-binding protein -
  AAG895_RS01880 (AAG895_01880) - 433986..434690 (+) 705 WP_345793874.1 ABC transporter ATP-binding protein -
  AAG895_RS01885 (AAG895_01885) - 434706..435575 (+) 870 WP_345793875.1 branched-chain amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53256.80 Da        Isoelectric Point: 8.5249

>NTDB_id=994144 AAG895_RS01860 WP_345793870.1 429704..431218(+) (comM) [Thauera sp. JM12B12]
MSLALVRTRALEGLVAPEVTVEVHLANGLPAFSLVGLADTEVREARDRVRAAIQSSQFEFPQRRITVNLAPADLPKEGGR
FDLAIAVGILVASGQVAGRLLEGLEFCGELSLNGDLRPVRGVLAAALAAARVARGLVLPAGNAAEAALARRAQVLPAASL
LAVCAHLNGHTAIETTSRADSTAPRPAAAGAQGADLADVRGQLQARRALEVAAGGSHSLLLFGPPGAGKSMLAQRLPGVL
PPMSEEEAIEAAAVASIEGAFDIRDWGRRPFRAPHHSSSSAALVGGGAVPRPGEISLAHRGVLFLDELPEFDRRVLESLR
EPLETGTITVSRARRRAEFPARFQLVAAMNPCPCGHHGDPQRNCRCTPDQVARYRARLSGPLLDRIDLVVEVPAIAPEAL
AGSAPGEDSAAVRARVEHARTVQIARQGCANADLSAGDVERHCRPDAGGDRLLQQSMQRLQLSARAYHRVLRVARTLADL
VDAPRPGVAHIAEAIQYRRSLDGR

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=994144 AAG895_RS01860 WP_345793870.1 429704..431218(+) (comM) [Thauera sp. JM12B12]
ATGTCGCTCGCGCTCGTGCGCACCCGCGCGCTCGAAGGACTCGTCGCGCCCGAGGTCACGGTCGAGGTCCATCTCGCCAA
CGGGCTGCCGGCATTCAGCCTGGTCGGGCTGGCCGACACCGAGGTGCGCGAGGCCCGCGATCGTGTGCGCGCGGCGATCC
AGTCCTCGCAGTTCGAATTTCCCCAACGCCGCATCACCGTCAACCTGGCGCCTGCCGACCTGCCGAAGGAGGGCGGGCGC
TTCGACTTGGCGATCGCGGTCGGCATCCTGGTGGCCTCGGGGCAGGTCGCGGGGCGTCTGCTCGAGGGGCTGGAGTTCTG
TGGCGAGCTGTCGCTGAACGGCGATCTGCGCCCGGTGCGCGGGGTGCTGGCGGCGGCGCTCGCGGCGGCCCGGGTGGCGC
GCGGTCTGGTGCTGCCCGCAGGCAACGCGGCCGAGGCGGCGCTGGCACGGCGCGCCCAGGTGCTGCCGGCGGCGAGCCTG
CTCGCGGTGTGTGCGCATCTCAATGGCCATACCGCCATCGAAACCACGAGCCGCGCGGATTCGACGGCGCCACGGCCGGC
CGCAGCGGGCGCGCAGGGGGCCGACCTCGCCGATGTGCGCGGACAACTGCAGGCGCGGCGTGCGCTCGAGGTGGCAGCGG
GCGGCAGTCATTCGCTGCTGCTCTTCGGCCCGCCGGGCGCCGGCAAGTCGATGCTGGCGCAGCGCCTGCCCGGCGTGCTG
CCGCCGATGAGCGAGGAGGAGGCGATCGAGGCCGCCGCGGTGGCCTCGATCGAGGGCGCCTTCGATATCCGCGACTGGGG
GCGACGGCCGTTTCGCGCACCACACCATTCGTCGTCGTCGGCGGCGCTGGTCGGTGGCGGTGCGGTGCCGCGTCCGGGGG
AGATTTCGCTTGCCCATCGCGGCGTGTTGTTTCTGGATGAACTGCCCGAATTCGACCGCCGCGTGCTCGAATCACTGCGC
GAGCCGCTCGAGACCGGCACGATCACGGTGTCGCGGGCGCGCCGACGGGCGGAATTTCCCGCCCGCTTCCAGCTCGTCGC
CGCGATGAACCCCTGTCCCTGCGGCCACCATGGTGACCCCCAGCGCAACTGCCGGTGCACGCCCGACCAGGTCGCGCGCT
ACCGCGCCCGCCTGTCCGGGCCGCTGCTCGACCGCATCGACCTCGTCGTGGAGGTGCCGGCGATCGCGCCCGAGGCGCTC
GCCGGCAGCGCACCCGGCGAGGATTCGGCCGCCGTTCGCGCCCGCGTCGAGCATGCGCGCACGGTGCAGATCGCACGCCA
GGGCTGCGCCAACGCCGACCTGTCCGCCGGCGACGTGGAACGCCACTGCCGCCCCGATGCGGGAGGGGATCGCCTGCTGC
AGCAGAGCATGCAGCGGCTGCAGCTGTCGGCGAGGGCGTATCATCGCGTGCTCCGGGTGGCGCGCACGCTTGCGGACCTC
GTCGATGCGCCCCGCCCCGGCGTCGCGCACATCGCCGAGGCGATCCAGTACCGCCGCAGCCTCGACGGCCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-398)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.2

99.206

0.538
  comM Vibrio campbellii strain DS40M4

53.8

99.206

0.534
  comM Haemophilus influenzae Rd KW20

51.195

99.603

0.51
  comM Legionella pneumophila str. Paris

49.703

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.703

100

0.498
  comM Glaesserella parasuis strain SC1401

48.907

99.802

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

100

0.431

Multiple sequence alignment