Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QMG15_RS00215 Genome accession   NZ_AP027055
Coordinates   53490..55061 (-) Length   523 a.a.
NCBI ID   WP_281788970.1    Uniprot ID   -
Organism   Limnohabitans sp. INBF002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 48490..60061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG15_RS00200 (LINBF2_00400) - 50651..51850 (-) 1200 WP_281788966.1 MFS transporter -
  QMG15_RS00205 (LINBF2_00410) - 52027..52752 (+) 726 WP_281788967.1 DUF692 family multinuclear iron-containing protein -
  QMG15_RS00210 (LINBF2_00420) - 52746..53483 (+) 738 WP_281788968.1 putative DNA-binding domain-containing protein -
  QMG15_RS00215 (LINBF2_00430) comM 53490..55061 (-) 1572 WP_281788970.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QMG15_RS00220 (LINBF2_00440) - 55272..56042 (+) 771 WP_281788971.1 TorF family putative porin -
  QMG15_RS00225 (LINBF2_00450) - 56074..56412 (+) 339 WP_108359522.1 P-II family nitrogen regulator -
  QMG15_RS00230 (LINBF2_00460) amt 56428..57897 (+) 1470 WP_281788972.1 ammonium transporter -
  QMG15_RS00235 (LINBF2_00470) glcE 58034..59251 (+) 1218 WP_281790042.1 glycolate oxidase subunit GlcE -

Sequence

Protein


Download         Length: 523 a.a.        Molecular weight: 55362.41 Da        Isoelectric Point: 7.8670

>NTDB_id=99404 QMG15_RS00215 WP_281788970.1 53490..55061(-) (comM) [Limnohabitans sp. INBF002]
MTLALIHSRALLGLQAPAVTVEVHLANGLPSFTLVGLADTEVKEARERVRCAIQNAGLDFPTNKRITVNLAPADLPKDSG
RFDLPIALGILAANGQLDEAALALHEFAGELSLSGELRPVRGALAMGLALRSAGVRTRLVLPPGSAEEAALVPTAEVYRA
QHLSDVVAHFAKPEVKGLVAQREEATTHPVHTTEGWSRIETPTFSAPAAAHHPDLADVKGQAGPRRALEIAAAGGHSLLL
VGPPGTGKSMLAQRFAALLPDMTLDEALESAAIASLAGRFELNQWMQRPTRSPHHTATSVALVGGGTPPRPGEISLAHNG
VLFLDELAEVKRSALEALREPLENGHITISRAATQAKFPARFQLISAMNPCPCGYLGSPLKACRCTPDQVARYQGKLSGP
LLDRIDLQVEVPTLATEVLMQSGTGESTATVRARCLVAHAKALVRQGAPNHGLQGQALETHMHLDAAAATFLQNAASKLG
WSSRSTHRALRVARTIADLADSTSVQVAHVAEALQYRRVLVNH

Nucleotide


Download         Length: 1572 bp        

>NTDB_id=99404 QMG15_RS00215 WP_281788970.1 53490..55061(-) (comM) [Limnohabitans sp. INBF002]
ATGACGCTCGCGTTAATTCACAGCCGCGCACTCTTGGGTTTGCAAGCACCGGCCGTGACCGTTGAGGTGCATTTGGCCAA
TGGCCTGCCCAGCTTCACCTTGGTGGGACTGGCGGATACCGAAGTTAAAGAAGCGCGCGAACGCGTGCGCTGCGCCATTC
AAAACGCAGGCTTGGATTTCCCAACGAACAAACGCATCACGGTGAACCTCGCGCCCGCCGACTTGCCCAAAGACTCTGGC
CGTTTTGACTTGCCGATTGCTTTGGGCATCTTGGCGGCGAATGGTCAGCTCGACGAGGCCGCATTGGCTTTGCATGAGTT
TGCGGGCGAGTTGTCTTTGTCGGGCGAGCTGCGTCCCGTGCGCGGCGCACTCGCCATGGGGCTGGCCCTGCGCAGTGCGG
GGGTGCGCACGCGGTTGGTGTTGCCGCCCGGCAGCGCAGAAGAGGCCGCACTCGTGCCCACCGCCGAGGTGTACCGCGCC
CAACATTTGAGCGATGTGGTGGCGCACTTTGCCAAACCCGAGGTGAAAGGCTTGGTCGCGCAACGCGAAGAGGCCACGAC
GCACCCGGTACACACGACCGAAGGATGGTCGCGCATTGAGACGCCCACCTTCAGCGCACCCGCCGCCGCTCACCACCCGG
ACCTTGCCGACGTGAAGGGCCAAGCAGGCCCGCGACGCGCCCTAGAGATTGCAGCAGCGGGTGGGCACTCTCTTCTATTA
GTAGGACCGCCCGGCACAGGCAAGTCCATGCTGGCGCAACGCTTTGCGGCCTTGCTGCCCGACATGACGTTGGACGAGGC
CTTGGAAAGCGCTGCGATTGCCAGCCTAGCCGGTCGTTTTGAGTTGAACCAGTGGATGCAGCGCCCTACGCGCAGCCCGC
ACCACACGGCCACCTCGGTGGCCTTGGTGGGTGGCGGCACACCGCCTAGACCGGGGGAAATTTCTTTGGCACACAACGGC
GTGTTGTTTCTGGATGAGTTGGCCGAAGTCAAACGCAGCGCACTCGAAGCGTTGCGTGAACCGCTGGAGAACGGCCACAT
CACCATTTCACGCGCGGCCACACAGGCCAAATTTCCGGCGCGTTTTCAACTCATCTCGGCCATGAACCCCTGCCCTTGCG
GCTACTTGGGCTCGCCCCTCAAGGCTTGCCGATGCACGCCCGACCAAGTGGCGCGTTACCAAGGCAAGCTCAGCGGCCCA
TTGCTAGACCGCATCGACTTGCAGGTGGAAGTGCCCACGTTGGCCACCGAGGTGTTGATGCAAAGCGGGACGGGTGAATC
CACAGCCACCGTTCGTGCGCGTTGTTTGGTCGCGCACGCCAAAGCACTGGTGCGACAAGGCGCCCCCAACCACGGTTTGC
AAGGCCAAGCCTTGGAAACGCACATGCACCTCGATGCAGCAGCGGCCACGTTTTTACAAAACGCTGCCAGCAAGCTTGGC
TGGTCTAGCCGCAGCACACACCGTGCACTGCGCGTGGCGCGCACGATTGCCGACTTGGCCGACAGCACATCCGTGCAAGT
GGCGCATGTGGCCGAAGCACTGCAATACCGGCGCGTGTTGGTCAACCACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-417)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(425-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.962

99.426

0.507
  comM Vibrio campbellii strain DS40M4

50.096

99.618

0.499
  comM Glaesserella parasuis strain SC1401

49.24

100

0.495
  comM Haemophilus influenzae Rd KW20

49.042

99.809

0.489
  comM Legionella pneumophila str. Paris

46.654

100

0.467
  comM Legionella pneumophila strain ERS1305867

46.654

100

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.267

99.618

0.411

Multiple sequence alignment