Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   TTHNP4_RS10235 Genome accession   NZ_LR027517
Coordinates   1833747..1834931 (+) Length   394 a.a.
NCBI ID   WP_124105325.1    Uniprot ID   -
Organism   Thermus thermophilus isolate TTHNAR1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1828747..1839931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTHNP4_RS10205 (TTHN1_02057) - 1828964..1829461 (-) 498 WP_029765679.1 hypothetical protein -
  TTHNP4_RS10210 (TTHN1_02058) - 1829495..1830214 (+) 720 WP_124105320.1 hypothetical protein -
  TTHNP4_RS10215 (TTHN1_02059) - 1830220..1831305 (+) 1086 WP_172596948.1 enolase C-terminal domain-like protein -
  TTHNP4_RS10220 (TTHN1_02060) - 1831291..1831917 (-) 627 WP_124105322.1 HAD family phosphatase -
  TTHNP4_RS10225 (TTHN1_02061) - 1831910..1832959 (-) 1050 WP_124105323.1 MFS transporter -
  TTHNP4_RS10230 (TTHN1_02062) - 1832998..1833774 (+) 777 WP_172596949.1 glycine cleavage system protein T -
  TTHNP4_RS10235 (TTHN1_02063) cinA 1833747..1834931 (+) 1185 WP_124105325.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  TTHNP4_RS10240 (TTHN1_02064) thpR 1834928..1835524 (+) 597 WP_008633763.1 RNA 2',3'-cyclic phosphodiesterase -
  TTHNP4_RS10245 (TTHN1_02065) recA 1835475..1836497 (+) 1023 WP_011173842.1 recombinase RecA Machinery gene
  TTHNP4_RS10250 (TTHN1_02066) rny 1836498..1838222 (+) 1725 WP_124105326.1 ribonuclease Y -
  TTHNP4_RS10255 (TTHN1_02067) - 1838234..1839271 (+) 1038 WP_124105327.1 rod shape-determining protein -
  TTHNP4_RS10260 (TTHN1_02068) fabZ 1839278..1839706 (+) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42941.42 Da        Isoelectric Point: 7.0541

>NTDB_id=992893 TTHNP4_RS10235 WP_124105325.1 1833747..1834931(+) (cinA) [Thermus thermophilus isolate TTHNAR1]
MERAEILGVGTELLYGETLDTNTGEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVREEEVEVGTYPKLHGVEVVVRGREDRVAELAEKIKKKLLKE
VWGEGEITLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=992893 TTHNP4_RS10235 WP_124105325.1 1833747..1834931(+) (cinA) [Thermus thermophilus isolate TTHNAR1]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGCACCGAGCTCCTTTACGGGGAGACCCTGGACACCAACACGGGGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGCCGGGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAGACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTTCGGGAAGAAGAGGTGGAGGTGGGCACCTACCCCAAGCTCCACG
GGGTGGAGGTGGTCGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTTGCGGAGAAGATCAAGAAGAAACTTCTCAAGGAG
GTCTGGGGCGAGGGGGAGATAACCCTGGCCGAGGCGGTAAAAAGGCGTATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAAAGCCTCACCGGGGGGCTTTTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTACTTGGGAGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCTATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGCGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCTTAAGAAGCGTCTACGCGGCTTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Competence-damaged protein (CinA)

(248-392)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus mitis NCTC 12261

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

34.867

100

0.365
  cinA Streptococcus pneumoniae R36A

34.625

100

0.363
  cinA Streptococcus pneumoniae Rx1

34.625

100

0.363
  cinA Streptococcus pneumoniae R6

34.625

100

0.363
  cinA Streptococcus pneumoniae D39

34.383

100

0.36