Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TTHNP4_RS08410 Genome accession   NZ_LR027517
Coordinates   1513581..1515065 (-) Length   494 a.a.
NCBI ID   WP_124105114.1    Uniprot ID   -
Organism   Thermus thermophilus isolate TTHNAR1     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1508581..1520065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTHNP4_RS08390 (TTHN1_01689) - 1508865..1509344 (-) 480 WP_014509792.1 DUF4384 domain-containing protein -
  TTHNP4_RS08395 (TTHN1_01690) - 1509384..1509995 (-) 612 WP_011227771.1 ribonuclease HII -
  TTHNP4_RS08400 (TTHN1_01691) - 1510020..1511567 (+) 1548 WP_124105112.1 polyhydroxybutyrate depolymerase -
  TTHNP4_RS08405 (TTHN1_01692) - 1511572..1513584 (+) 2013 WP_124105113.1 molybdopterin oxidoreductase family protein -
  TTHNP4_RS08410 (TTHN1_01693) comM 1513581..1515065 (-) 1485 WP_124105114.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TTHNP4_RS08415 (TTHN1_01694) - 1515078..1516208 (-) 1131 WP_124105115.1 nitrate/nitrite transporter -
  TTHNP4_RS08420 (TTHN1_01695) - 1516210..1517022 (-) 813 WP_014509788.1 DMT family transporter -
  TTHNP4_RS08425 (TTHN1_01696) - 1517019..1517915 (-) 897 WP_124105116.1 DMT family transporter -
  TTHNP4_RS08430 (TTHN1_01697) - 1518027..1519154 (+) 1128 WP_124105117.1 NAD(P) transhydrogenase subunit alpha -
  TTHNP4_RS08435 (TTHN1_01698) - 1519154..1519456 (+) 303 WP_008630585.1 proton-translocating transhydrogenase family protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52966.35 Da        Isoelectric Point: 8.7677

>NTDB_id=992882 TTHNP4_RS08410 WP_124105114.1 1513581..1515065(-) (comM) [Thermus thermophilus isolate TTHNAR1]
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSQF
DLPIALGLLAAQGVVPLEALSPFALAGELGLDGSLRPVPGAVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQ
EAVAFLKGEEALAEARPEEAPEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
ALEVTRIHSAAGKPVRRLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSREALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCTPAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGE
GTEAVRERVLRARERMLARQGRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
EAHVAEALAYRRAL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=992882 TTHNP4_RS08410 WP_124105114.1 1513581..1515065(-) (comM) [Thermus thermophilus isolate TTHNAR1]
ATGCTGGCCCAGGTGCGAAGCTACGCCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGACGTTAGCCCGGG
GCTTCCCAGCTACGCCCTGGTGGGCCTGCCCGACAAGGCGGTGGAGGAAAGCCGGGAGCGCGTCCGGGCGGCCCTCAAGA
ACGCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAGCTTCGGAAGGAGGGGAGCCAGTTT
GACCTTCCCATCGCCCTGGGCCTCCTCGCGGCCCAGGGGGTGGTGCCCCTCGAGGCCCTCTCCCCCTTCGCCCTCGCGGG
GGAGCTTGGCTTGGACGGGAGCCTGAGGCCCGTTCCCGGGGCGGTGAACCTGGCCCTGGGGGCCCTGGCCGAGGGGAAGA
AGCTCCTCCTGCCCCTGGAGAGCGCCAAGGAGGCGGCCTTGGTGGAGGGGGTGGAGGTCTACGGGGCGAGAAGCCTCCAG
GAAGCCGTGGCCTTCCTCAAGGGCGAGGAGGCCTTGGCCGAGGCCCGGCCCGAGGAGGCCCCGGAAGCGGTGGAGGCGCT
GGACCTCAGGGACGTCAAGGGCCAGGCCAAGGCCAAGCGCGCCCTGGAGATCGCCGCCGCGGGCTTCCACCACCTCCTCA
TGGTGGGAAGCCCGGGCTCGGGAAAGACCATGCTGGCGCGGCGGCTTCCCTTCCTCCTCCCGCCCCTCTCCCGGGAGGAG
GCCTTGGAGGTGACCCGGATCCACTCCGCCGCGGGGAAGCCGGTGCGGAGGCTTGTGAAGGCCCCGCCCTTCCGCGCCCC
GCACCACACGGTGAGCTACGCCGGGCTCATCGGGGGTGGGGCCATCCCCAAGCCCGGGGAGGTTTCCTTGGCCCACCGGG
GCGTGCTCTTTCTGGACGAGTTCCCGGAGTTTTCCCGGGAGGCCCTCGAGGCCCTGCGCCAGCCCCTGGAGGACGGGGTG
GTGACCGTGGCCCGGGCCCGGGCAAGCCTCACCTTTCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGCACGGGGACCCGGAAAGGCCTTGCACCTGCACCCCCGCCGCCCAGAGGCGCTACGCGGCCCGGATCTCCGGGC
CCCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCCTCACCCCCGAGGAGCTCGCCCGCGCCCCCGAGGGGGAG
GGCACGGAGGCGGTGCGGGAGCGGGTCCTAAGGGCCCGGGAGCGGATGCTCGCCCGCCAAGGGAGGCCTAACGGGCTCCT
CTCGGGGCGGGCCCTGAGGGAGCACGCCCGCCTCACCCCACCGGCCCAGGCCCTCCTCCAGGAGGCGGCCAAGCGGATGC
TCCTTTCGGCCCGGAGCTACGACCGCGTCCTCCGGGTGGCCCGCACCGTCGCCGACCTCCTGGGCGAGGAGAGGGTGGGG
GAGGCCCACGTGGCCGAGGCCCTGGCCTACCGCAGGGCCCTCTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

48.583

100

0.486
  comM Vibrio cholerae strain A1552

48.583

100

0.486
  comM Haemophilus influenzae Rd KW20

47.39

100

0.478
  comM Acinetobacter baylyi ADP1

47.862

99.393

0.476
  comM Glaesserella parasuis strain SC1401

46.23

100

0.472
  comM Vibrio campbellii strain DS40M4

46.559

100

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.04

100

0.46
  comM Legionella pneumophila str. Paris

44.98

100

0.453
  comM Legionella pneumophila strain ERS1305867

44.98

100

0.453