Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAGQ96_RS01505 Genome accession   NZ_CP152417
Coordinates   368495..369040 (+) Length   181 a.a.
NCBI ID   WP_147194095.1    Uniprot ID   -
Organism   Pantoea sp. MBD-2R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 363495..374040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGQ96_RS01490 (AAGQ96_01490) - 363565..363894 (+) 330 WP_147194088.1 MmcQ/YjbR family DNA-binding protein -
  AAGQ96_RS01495 (AAGQ96_01495) - 364089..365141 (-) 1053 WP_147194091.1 NAD(P)-dependent alcohol dehydrogenase -
  AAGQ96_RS01500 (AAGQ96_01500) uvrA 365354..368185 (-) 2832 WP_342754665.1 excinuclease ABC subunit UvrA -
  AAGQ96_RS01505 (AAGQ96_01505) ssb 368495..369040 (+) 546 WP_147194095.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AAGQ96_RS01510 (AAGQ96_01510) - 369187..370404 (+) 1218 WP_147194097.1 diguanylate phosphodiesterase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19330.28 Da        Isoelectric Point: 5.2456

>NTDB_id=989024 AAGQ96_RS01505 WP_147194095.1 368495..369040(+) (ssb) [Pantoea sp. MBD-2R]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQGGQGNNNGWGQPQQPQGGNQFSGGQQQSRPQQP
QQSSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=989024 AAGQ96_RS01505 WP_147194095.1 368495..369040(+) (ssb) [Pantoea sp. MBD-2R]
ATGGCCAGCAGAGGCGTAAACAAAGTTATCCTGGTGGGAAATCTGGGTCAGGATCCGGAAGTCCGCTACATGCCGAATGG
CGGCGCCGTTGCCAACATTACTCTGGCCACGTCTGAAAGCTGGCGTGACAAGCAGACCGGCGAAACTAAAGAGAAAACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTGGCAGGTGAATACCTGCGTAAAGGTTCCCAGGTTTATATC
GAAGGTGCGCTGCAAACGCGTAAATGGACTGACCAGGCAGGCGTAGAGAAGTACACCACCGAAGTCGTTGTTAACGTTGG
CGGTACCATGCAGATGCTGGGCGGACGTCAGGGCGGCGGTGCGCCAGCAGGTGGCGGTCAGGGTGGCCAGGGTAACAACA
ACGGTTGGGGCCAGCCACAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGTGGACAGCAGCAGTCTCGTCCGCAGCAGCCG
CAGCAGAGCAGCGCGCCAGCAAACAATGAACCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.131

100

0.729
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.58
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459
  ssb Neisseria gonorrhoeae MS11

46.111

99.448

0.459
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.079

98.343

0.365

Multiple sequence alignment