Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   NST80_RS02830 Genome accession   NZ_CP152039
Coordinates   552666..554159 (+) Length   497 a.a.
NCBI ID   WP_014632819.1    Uniprot ID   A0A1W5ZDT1
Organism   Streptococcus sp. FSL K6-1323     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 547666..559159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS02820 (NST80_02820) amiA 548483..550453 (+) 1971 WP_149561436.1 peptide ABC transporter substrate-binding protein Regulator
  NST80_RS02825 (NST80_02825) amiA 550635..552605 (+) 1971 WP_183138126.1 peptide ABC transporter substrate-binding protein Regulator
  NST80_RS02830 (NST80_02830) amiC 552666..554159 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  NST80_RS02835 (NST80_02835) amiD 554159..555085 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  NST80_RS02840 (NST80_02840) amiE 555095..556180 (+) 1086 WP_013990226.1 ABC transporter ATP-binding protein Regulator
  NST80_RS02845 (NST80_02845) amiF 556173..557102 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  NST80_RS02850 (NST80_02850) - 557152..557937 (-) 786 WP_183138127.1 ABC transporter permease -
  NST80_RS02855 (NST80_02855) - 557949..558647 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  NST80_RS02860 (NST80_02860) - 558652..559029 (-) 378 WP_002884206.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55883.67 Da        Isoelectric Point: 10.0050

>NTDB_id=986312 NST80_RS02830 WP_014632819.1 552666..554159(+) (amiC) [Streptococcus sp. FSL K6-1323]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGHGWRLHQFKESKQFYATRDVPVLERVFGFYKHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=986312 NST80_RS02830 WP_014632819.1 552666..554159(+) (amiC) [Streptococcus sp. FSL K6-1323]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCCGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAAGCTATTTACCAAAAATATGTGGATAGTTTAGGACA
TGGCTGGCGTTTGCATCAATTCAAGGAAAGTAAGCAATTCTATGCGACACGTGATGTGCCTGTACTTGAACGTGTGTTTG
GCTTCTATAAGCACCTCTTTGAATTTGACAATACGGGATGGGTGAAAGATAAAACAAATCCAAACTTGAAACGATACATT
CGAATTGAAAATGATCCAGCTATTGGTTGGTCAGTGGTTGGTTCAGGGACTAAGCATAAATATCTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTCGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACGCAAGGTCAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAGATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCGAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCTACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACGCTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGAATCCCAGCATCTATCGTTAG
TGTTATTACAGGGGCAACTTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCTCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W5ZDT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.39

100

0.984
  amiC Streptococcus thermophilus LMG 18311

97.384

100

0.974
  amiC Streptococcus thermophilus LMD-9

97.384

100

0.974

Multiple sequence alignment