Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NST80_RS02820 Genome accession   NZ_CP152039
Coordinates   548483..550453 (+) Length   656 a.a.
NCBI ID   WP_149561436.1    Uniprot ID   -
Organism   Streptococcus sp. FSL K6-1323     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 543483..555453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS02795 (NST80_02795) - 544203..544778 (-) 576 WP_045768514.1 CYTH domain-containing protein -
  NST80_RS02800 (NST80_02800) - 544874..545548 (+) 675 WP_045768515.1 GTP pyrophosphokinase family protein -
  NST80_RS02805 (NST80_02805) - 545520..546356 (+) 837 WP_002884507.1 NAD kinase -
  NST80_RS02810 (NST80_02810) - 546353..547249 (+) 897 WP_002884380.1 RluA family pseudouridine synthase -
  NST80_RS02815 (NST80_02815) pta 547263..548246 (+) 984 WP_183138125.1 phosphate acetyltransferase -
  NST80_RS02820 (NST80_02820) amiA 548483..550453 (+) 1971 WP_149561436.1 peptide ABC transporter substrate-binding protein Regulator
  NST80_RS02825 (NST80_02825) amiA 550635..552605 (+) 1971 WP_183138126.1 peptide ABC transporter substrate-binding protein Regulator
  NST80_RS02830 (NST80_02830) amiC 552666..554159 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  NST80_RS02835 (NST80_02835) amiD 554159..555085 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71917.83 Da        Isoelectric Point: 4.9191

>NTDB_id=986310 NST80_RS02820 WP_149561436.1 548483..550453(+) (amiA) [Streptococcus sp. FSL K6-1323]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYIYNSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADGKAGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQESQERSFSDGGLSIARVFPMSSNYASVEKKYKDNIYYTAPGASTAAIGVNIDRQNYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALAIRNLFVPSDFVSAGDKTFGDLVTDKMSTYGDEWSGVNF
ADGQDGLYNAEKAKTEFAKAKEALQGEGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=986310 NST80_RS02820 WP_149561436.1 548483..550453(+) (amiA) [Streptococcus sp. FSL K6-1323]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATATTTATAACTCAGATCCTGAAACTTTAGACTATATCACGTCAAATACTGGAC
CTACTAAGACTGCTGTAACTAACGGTGTAGATGGTCTTATGGAAGCAGATAAATATGGAAATCTTGTTCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTTACTTATACCTATAAAATCCGTAAGGGTGTTAAATGGTATACTTCTGATGG
TGAAGAATATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATGGCAAAGCTGGAGCTCTTT
ACTTGGTGCAAGATTCTATTGCTGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGCGTCAAA
GCAATCGACGATTATACATTGCAATACACCCTTAAAAAACCAGAACCATACTGGAACTCTAAAACAACTTATGGCTTGCT
CTTCCCAGTTAACGAAGACTTCCTTAAGAACAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCCTTCTCAAATCTTTGACAGCTAAATCATCTATTGAGTTAACTAAGAATGAGAATTATTGGGATAAGAAA
AATGTGCATTTCGACGCTATCAAATTGTCATATTATGACGGATCTGACCAGGAATCACAAGAACGTAGTTTCTCTGATGG
CGGTCTCAGCATTGCACGTGTCTTCCCTATGAGCTCTAACTATGCGTCAGTAGAAAAGAAATATAAAGATAATATTTATT
ACACAGCGCCAGGTGCGTCTACAGCAGCTATTGGTGTGAATATTGACCGTCAAAACTATAAATTCTCAGCTAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCTATTGACCGTAC
AGCCTATCAATCACAAGTAAACGGTAAAGATGGGGCTGCTCTTGCTATACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGTGACCTTGTGACGGACAAGATGAGCACTTACGGTGATGAATGGTCTGGTGTCAATTTT
GCGGATGGTCAAGATGGTCTCTACAATGCGGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAAGCTCTTCAAGGTGA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGATCAAAGTTCTAAACTTAATGTTGCTCAAGCTCAATCATTGA
AACAAACGATTGAAAAATCATTGGGTAGTGAAAATGTCGTTATCGATATCAACCAGTTGTCATCTGATGATATGCAAAAT
GCAACCCTTAATGCGGCTAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTGGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGCGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCGGCCGCAGCTCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGCTATGCCCAAGCTCAAGCATGGTTGGAAGATAGCTCGCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATACGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

95.579

100

0.956
  amiA3 Streptococcus thermophilus LMG 18311

89.954

100

0.901
  amiA3 Streptococcus thermophilus LMD-9

89.802

100

0.899

Multiple sequence alignment