Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   NST80_RS02835 Genome accession   NZ_CP152039
Coordinates   554159..555085 (+) Length   308 a.a.
NCBI ID   WP_002886846.1    Uniprot ID   A0A0F3HAC7
Organism   Streptococcus sp. FSL K6-1323     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 549159..560085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS02825 (NST80_02825) amiA 550635..552605 (+) 1971 WP_183138126.1 peptide ABC transporter substrate-binding protein Regulator
  NST80_RS02830 (NST80_02830) amiC 552666..554159 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  NST80_RS02835 (NST80_02835) amiD 554159..555085 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  NST80_RS02840 (NST80_02840) amiE 555095..556180 (+) 1086 WP_013990226.1 ABC transporter ATP-binding protein Regulator
  NST80_RS02845 (NST80_02845) amiF 556173..557102 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  NST80_RS02850 (NST80_02850) - 557152..557937 (-) 786 WP_183138127.1 ABC transporter permease -
  NST80_RS02855 (NST80_02855) - 557949..558647 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  NST80_RS02860 (NST80_02860) - 558652..559029 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  NST80_RS02865 (NST80_02865) - 559211..560005 (+) 795 WP_013990229.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34607.77 Da        Isoelectric Point: 9.7054

>NTDB_id=986313 NST80_RS02835 WP_002886846.1 554159..555085(+) (amiD) [Streptococcus sp. FSL K6-1323]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLLVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTAKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=986313 NST80_RS02835 WP_002886846.1 554159..555085(+) (amiD) [Streptococcus sp. FSL K6-1323]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCAGCTTA
TTCTTACTGGAAATCAGTGATGCGTCAATTCTTTAAAAAGAAATCAACAGTAGTAATGTTGGGGATCTTGATTGCCATCG
TTTTGATGAGTTTCATCTATCCAATGTTCTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAATGCTCAATACTGGTTCGGTACTGACAGTAATGGTAAGTCCCTCTTTGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGTTATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTTTGGAATATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCCTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACACTGGGAACGCCAACTGCTAAGA
TTGTGGTTAAAAACATCATGCCACAACTTGTGTCAGTTATCGTAACTATGGCTAGTCAACTCTTGCCAGGATTTATCTCT
TACGAAGCCTTTCTTTCATACTTTGGTTTGGGGCTTCCAGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATTCTCGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F3HAC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.377

100

0.984
  amiD Streptococcus thermophilus LMG 18311

97.403

100

0.974
  amiD Streptococcus thermophilus LMD-9

97.403

100

0.974

Multiple sequence alignment